LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g1922	ATGGCTGGGATTGATGATAATGCTGCACTATCTGGTGATTGGTGTCTTCCTAGCCCAAGTCCAAGAACCTTTTTGTCTAGAATGTTGGATGAAGATCATGTAACAAGATCAGTCTCAGAACATTCTGGAAGTGGTAGAACTGGCGATCTCTTTCCGGGGACTCGTGAGCCTAGCGAGACAGGGAAAAGAAACATGACAGATAGGGCACAAGATGGTGATTCTGGAGCCCAATTGACCGATGCGAGTTTTCAGACCGAGCAGAAGTCGAGCTCCCGGGGTGGTCTTGTTGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCAAGGTTGAATACAGAAAGCATTAGATCTACTGACCTTTCGCTTAATTCTGACATTCAGTCTCCTTACTTGACCATCCCACCTGGTCTCAGTCCTACCACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACTGGAAAGTTCCTGTTCATGTCAAATGGCAACATGCGGATCTCAGAATTATCATCTGATGCTtcagaaaaatttaaagataatggcTTTGATGATATCTATACATCATCCTTTGCTTTTAAACCTGCAACAGATTCAGGCTCCTCTTTTTATCATGGTGGTGGAAGAAAAATAAATCCAACTACACTTCCTCAACAATCCCTTCCTGGTCTTGAGGTTTCGGCTCAGTCAGAAAATTCTTTTCAATCTCAAAGTGTTGATGCCGTCAAAGTTCAAACGGAGAACAAAAGTGGCCTTCATCTTCAGGCTGACTTTGTCGAATCGCCTCCTCAAAAGGATAATGGAATTAGAATGTTCTCAGCTGATCAAAGGGCTTTTGATGCTATTGGTGGTGGCATTGAACATTCTACTCCAATTGAAGAGCAAGCAGATGAAGGAGATCAAAGAGGCAATGGAGACTCAGTGGCTGGTGGTGTTGGTGGTGCACCATCTGATGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGCAGTGAGTACCCACGAAGCTACTACAAGTGTACACATCCGAATTGTCAGGTTAAGAAGAAAGTAGAACGATCTCATGAGGGCCACATAACTGAGATCATCTACAAGGGAGCACACAACCATCCAAAACCTCCTCCAAATCGCCGGTCGGGCATAGGTTCGGTTAACCTTCATACTGACATGCAAGTGGACAACCCTGAACATGTTGAACCACagtgtggtggtgatggtgaccTGGGCTGGGCTAATGTACAAAAAGGAAATATAGCTGGAGCTACTAATTGGAAGCATGACAACCTTGAAGCAACATCATCAGCATCTGTTGGCCCTGAATACTGCAACCAGTCCACCAATTTGCCGACTCAAAATGGTACTCACTTCGATTCAGGAGAGGCAGTGGATGCCTCATCTACTTTTTCtaatgaagaagatgaagatgatcAAGGCACTCATGGTAGTGTATCATTAGGCTATGATGGGGAAGGAGATGAATCAGAGTCTAAGAGAAGGAAACTGGAATCATATGCGGAGTTGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTACAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATACGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACGAATGCAGGGTGCACGGTAAGGAAGCACGTGGAGAGAGCATCGCATGACCTTAAATCCGTGATCACTACATACGAGGGAAAGCACAACCATGATGTTCCTGCTGCTCGTGCCAGCAGTCACGTCAACGCTAACGCTTCCAACGCCGTTCCCGGCCAAGCTTCTGGTGTCCTTCAGACCCATGTTCATAGACCTGAACCATCTCAAATTCACAATGGCATTGGAAGGCTTGAGAGGCCTTCCCTTGGCTCATTCAACCTTCCTGGGAGGCAGCAGCTAGGACCTTCCCATGGCTTCTCCTTTGGTATGAACCAACCCCTCCTGTCAAACCTGGCGATGTCAGGGTTAGGCCGCACGCAAGCGAAGCTTCCTGTCATGCCAGTTCATCCATTCTTGGTGCAACAACAACGCCCTGCGAATGATTTGGGTTTCATGTTGCCAAAGGGAGAGCCAAATGTGGAGGCTATTCCTGAACGTGGTGGCCTTAACCTTTCTAGTGGCTCATCAGTGTATCAAGAAATTATGAGTCGCATGCCTCTTGGACctcatatgtaa	2250	0.4507	MAGIDDNAALSGDWCLPSPSPRTFLSRMLDEDHVTRSVSEHSGSGRTGDLFPGTREPSETGKRNMTDRAQDGDSGAQLTDASFQTEQKSSSRGGLVERMAARAGFNAPRLNTESIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMSNGNMRISELSSDASEKFKDNGFDDIYTSSFAFKPATDSGSSFYHGGGRKINPTTLPQQSLPGLEVSAQSENSFQSQSVDAVKVQTENKSGLHLQADFVESPPQKDNGIRMFSADQRAFDAIGGGIEHSTPIEEQADEGDQRGNGDSVAGGVGGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPPPNRRSGIGSVNLHTDMQVDNPEHVEPQCGGDGDLGWANVQKGNIAGATNWKHDNLEATSSASVGPEYCNQSTNLPTQNGTHFDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYAELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNAVPGQASGVLQTHVHRPEPSQIHNGIGRLERPSLGSFNLPGRQQLGPSHGFSFGMNQPLLSNLAMSGLGRTQAKLPVMPVHPFLVQQQRPANDLGFMLPKGEPNVEAIPERGGLNLSSGSSVYQEIMSRMPLGPHM	749

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g1922	749	PANTHER	WRKY TRANSCRIPTION FACTOR 2-RELATED	106	675	-	-
	Ssu8g1922	749	MobiDBLite	consensus disorder prediction	70	92	-	-
	Ssu8g1922	749	SUPERFAMILY	WRKY DNA-binding domain	322	382	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	106	675	IPR044810	GO:0003700
	Ssu8g1922	749	Gene3D	WRKY domain	317	383	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	ProSiteProfiles	WRKY domain profile.	324	382	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	ProSiteProfiles	WRKY domain profile.	534	599	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	MobiDBLite	consensus disorder prediction	444	475	-	-
	Ssu8g1922	749	MobiDBLite	consensus disorder prediction	1	95	-	-
	Ssu8g1922	749	SUPERFAMILY	WRKY DNA-binding domain	531	599	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	MobiDBLite	consensus disorder prediction	444	510	-	-
	Ssu8g1922	749	Pfam	WRKY DNA -binding domain	540	596	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	Pfam	WRKY DNA -binding domain	324	380	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	SMART	WRKY_cls	539	598	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	SMART	WRKY_cls	323	381	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	Gene3D	WRKY domain	526	592	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu8g1922	749	MobiDBLite	consensus disorder prediction	301	330	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g1922	Ssu-Chr8	50078340	50081972	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g1922	1	744	WRKY Transcription Factor Family	AT5G56270	50.130	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ssu8g1922		WRKY	3.8e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g1922	K18835		-	gmx:100796545	1356.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu8g1922	8	50078340	50081972	Ssu8g1922	8	50078340	50081972	ECH