Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1921 ATGGAAACTATTGGGAAGATTAAGCATAGGAACTTGGTTCAGCTGCTGGGTTATTGTAAAGTTGGAGAGGAGAGGCTTCTTGTGTATGAGTTCATGAAATGGGGAAGTCTTGAGGCTGTTCTACATGAGAGTGCCAGAGGAGGAGGTTCAAAGCTTGATTGGGCTGCAAGAAAGAAGATTGCCATAGGGTCAGCTAGAGGTCTTGCATTTCTTCACCATAGTTGCATTCCTCACATTATACACCGGGACATGAAGTCCAGCAACATTCTTCTTGATGAAAATTTCGAGGCCAGAGTTTCTGATTTTGGCATGGCAAGATTGGTTAATGCCCTCGACACTCATCTCACTGTCAGCACACTTGCCGGAACACCAGGTTATGTACCCCCTGAGTACTACCAGAGTTTTAGATGTACAGCTAAAGGGGATGTCTATAGCTATGGTGTCATACTGCTAGAGCTTCTATCAGGGAAGAGACCAATTGACTCTTCTGAGTTTGGTGATGACACCAATCTTGTAGGATGGTCTAAGAAGCTTTacaaagagaaaagaattaatGAAATACTTGATCCTGACTTAGTTATGCAGACATCTACTGAAAGTGAATTATTGCAATATTTGAGAATTGCTTTTGAATGTCTAGATGAGAGACCGTACCGGCGGCCGACCATGATACAAGTGATGGCCATGTTTAAAGAGCTTCAGGTTGACACAGATAATGATATGCTTGATAGCTTCTCTCTGAGAGACAATGTTATTGATGAAGCATAA 768 0.4167 METIGKIKHRNLVQLLGYCKVGEERLLVYEFMKWGSLEAVLHESARGGGSKLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDTNLVGWSKKLYKEKRINEILDPDLVMQTSTESELLQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDNDMLDSFSLRDNVIDEA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1921 255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672|GO:0006468
Ssu8g1921 255 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 241 - -
Ssu8g1921 255 SUPERFAMILY Protein kinase-like (PK-like) 3 230 IPR011009 -
Ssu8g1921 255 Gene3D Transferase(Phosphotransferase) domain 1 33 251 - -
Ssu8g1921 255 SMART serkin_6 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1921 255 ProSiteProfiles Protein kinase domain profile. 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1921 255 Pfam Protein kinase domain 3 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1921 255 Gene3D Phosphorylase Kinase; domain 1 1 32 - -
Ssu8g1921 255 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 1 241 - -
Ssu8g1921 255 PIRSF ILK 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1921 Ssu-Chr8 50037405 50038172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1921 1 254 Receptor kinase-like Gene Family AT1G55610 78.516 7.48e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu8g1921 Pkinase 3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1921 - - gsj:114409366 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1921 8 50037405 50038172 Ssu8g1921 8 50037405 50038172 ECH