Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1916 ATGGCGATGCGCGACCTCGTCACGGGTTCCACTGCATGTGGCGActctgcttcttcttcttcttcctccgcAAACCCTCTCGCTTCCCTCGCCAACGTCCTTATTGGCTCTTCCTCCAAAACTCAGGAGAGGCTGAAGGAGATTCCCCAATCCACTCCCACCGACCCTGCCTCGCAATTTTACTCAACGACTCTCCTCGCCAATCACCTTCCTGGTTCCGAACTCGATAAGCCTCTATTGGATGCTAGCTCTCAGGGTTCGGAGTTTTTGCATAGGTTCCGTGGCACGACTGGGCTTGAGGAGACGTGGGACGAGATACAGCGCGAGGGCGCGGTTGGGCAACTGCACCAACCGCTGCCCCCGCTTCAACAACCGCCGTTGGATgGGACGCCGCAAAGAGTTCTGTCAAGCTTTTTGCACTCGTTTCTTGATAGCAGCCGTGGTGGAGTGCCTTTTCATCCTGCCCCTCTTCCGATGTTGGGTTTATCTGAAGGTGATAAACAGTGCATACGTGACCGGAGCAGCATAATGGCCAGGCATCTCTTTGCAGATAAAAGTGAAGAATTTATTGATGCCCAAGTAAATGCACTTCTGTGCTCTCTAGATATTGACAGCAATGTCCGTGGTAAGGGACCTATGCTTGAAAGATTTCGGGAGCTTGAGGATTATTGGAATGAGTCTCAAGGCAACCTGAGACTTGGTGCTCCAGCTGCAGAGGGGTGGATTGCTGAATTTGGTCAACATAGGGAACAATATGATAATCCTGATTCATGGGCTAACTCATTTGAACAACAGTATGGTGCAAATGGTTGGGTGTCTGAATTTGAACATTCCCAATTGTCATCAGTAGATCAAATGCGAGGTATGAACATGTCAAACTTTGCTGCAATGGAGCAGACTCGTATGCTTGCAAACACATTGGCCCAAAATAATGACCCTAAATTTCAGAACTCAAAATTCCTTCAATTTTTATCAAAGATGAGCCGTGGCGAGTTGATTATTGATGACAATCAAGTTAAAGAGAATGCATTACCTGCATCTGGAGATTGGGCAACAGAATACGATCAGCAATATAATCATGGTCATGCATGGGCTGgagaatttttaaatgataagGTTTATCATGGACCTGATCAGTGGGTGAATGAATTTACAACTGAAGGACGGCAGCATGATGCAGTTGATGATCAGTGGGTTAATGAATTCTCAAAGTTGAATGTTAATGATTGGGCAGATGAATTTGGTCAGCAGATTGGTGAAGGAGCCTTAGGGGATAGCACTTCTGATAGTTGGGCACAGGCATATGATGAGTTCCTAAATGAGCAAGTTGCTGCCAAGCGGCAGTTAGACAGTTCAAGGGGCGTGTATGTCTTTTCAGATTTAAATCCTTATGTTGGTCATCCAAATCCACTAAAAGAAGGCCAAGATCTATTCAGGAAAGGACTTTTAAGTGAAGCAGTTCTAGCATTGGAAGCTGAAGTCCTAAAAAGCCCTCAGAATGCTGAAGGGTGGAGACTGCTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCTATTGCAGCAATGATGCGTGCGCAGGAGGCTGACCCAACAAACCTGGAAGTGCTTCTGGCTCTTGGTGTCAGTCATACAAATGAACTGGAGCAAACAGCTGCTCTGAAGTATCTGTATGGATGGTTGCGCCATCACCCAAAATATGGAACACTTGCCCCGCCCGAGATGTCTGATTCTTTGTACTATGCTGATGTTGCTAGGTTATTCAATGAAGCAGCTGAACTATCGCCTCAAGATGCAGATGTCCACATAGTTCTTGGGGTCATGTACAACTTATCCAGAGAATATGACAAAGCCATTGCATCTTTTGAAAGAGCACTGAAACTTAAGCCACAGGATTATTCTCTATGGAACAAGCTGGGTGCAACACAAGCAAACAGTGTTCAAAGTGCTGATGCAATAATGGCTTATCAACAGGCACTGGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGTATCAGTTATGCAAACCAGGGTATGTATGATGAGTCCATTCGTTACTATGTTCGAGCACTTGCTATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGAATTTCATTAAGCTGTGCTTCTAGGAATGACATGTTGGAAGCTTGTGATAGTCGTAATTTGGATCTTCTCCAGAAAGAGTTTCCACTACAGTAA 2220 0.4441 MAMRDLVTGSTACGDSASSSSSSANPLASLANVLIGSSSKTQERLKEIPQSTPTDPASQFYSTTLLANHLPGSELDKPLLDASSQGSEFLHRFRGTTGLEETWDEIQREGAVGQLHQPLPPLQQPPLDGTPQRVLSSFLHSFLDSSRGGVPFHPAPLPMLGLSEGDKQCIRDRSSIMARHLFADKSEEFIDAQVNALLCSLDIDSNVRGKGPMLERFRELEDYWNESQGNLRLGAPAAEGWIAEFGQHREQYDNPDSWANSFEQQYGANGWVSEFEHSQLSSVDQMRGMNMSNFAAMEQTRMLANTLAQNNDPKFQNSKFLQFLSKMSRGELIIDDNQVKENALPASGDWATEYDQQYNHGHAWAGEFLNDKVYHGPDQWVNEFTTEGRQHDAVDDQWVNEFSKLNVNDWADEFGQQIGEGALGDSTSDSWAQAYDEFLNEQVAAKRQLDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKSPQNAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQTAALKYLYGWLRHHPKYGTLAPPEMSDSLYYADVARLFNEAAELSPQDADVHIVLGVMYNLSREYDKAIASFERALKLKPQDYSLWNKLGATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKAENAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1916 739 Gene3D Tetratricopeptide repeat domain 449 739 IPR011990 GO:0005515
Ssu8g1916 739 MobiDBLite consensus disorder prediction 1 25 - -
Ssu8g1916 739 ProSiteProfiles TPR repeat region circular profile. 668 700 - -
Ssu8g1916 739 ProSiteProfiles TPR repeat region circular profile. 600 633 - -
Ssu8g1916 739 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
Ssu8g1916 739 Pfam Tetratricopeptide repeat 600 633 IPR001440 GO:0005515
Ssu8g1916 739 Pfam Tetratricopeptide repeat 669 700 IPR001440 GO:0005515
Ssu8g1916 739 Pfam Tetratricopeptide repeat 471 533 - -
Ssu8g1916 739 SUPERFAMILY TPR-like 452 738 IPR011990 GO:0005515
Ssu8g1916 739 ProSiteProfiles TPR repeat profile. 634 667 IPR019734 GO:0005515
Ssu8g1916 739 PANTHER BNAC09G53570D PROTEIN 1 738 - -
Ssu8g1916 739 MobiDBLite consensus disorder prediction 11 25 - -
Ssu8g1916 739 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Ssu8g1916 739 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 738 IPR024111 -
Ssu8g1916 739 ProSiteProfiles TPR repeat profile. 668 701 IPR019734 GO:0005515
Ssu8g1916 739 SMART tpr_5 634 667 IPR019734 GO:0005515
Ssu8g1916 739 SMART tpr_5 501 534 IPR019734 GO:0005515
Ssu8g1916 739 SMART tpr_5 600 633 IPR019734 GO:0005515
Ssu8g1916 739 SMART tpr_5 668 701 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1916 613 731 Glycosyltransferase AT3G04240 31.933 5.40e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1916 K13342 - gmx:100789878 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1916 8 49895226 49916326 Ssu8g1916 8 49895226 49916326 ECH