Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1913 ATGAACGAGAGGCGCCTGAAGCAGAAGAGAAGAGTTATCACTGATCATTGtgactttctttctttcccgaCTGCCGAATTTTCCATTGGCAAACCCTTTCGGAGTAGCGTTCGCCGCTTCCTCTCTCACCACACACATCTCACCCTACCATCCTCTCTCTCACCCACCCTGGTGACTTGGCAGATGTTGCTCCAACTCAAATCTTTTGATGGAGAATTGGGGTTGTCATCGACGAAAATGGCCCTAGATATCATCGAGGAAAATGTGATTCGGACTCGGAGCTCGATTTACTGCATCCAGTGCCGACTCTTTGgatGGAGTGAGCATCCAGTGTGCCGCAAGCGATACCATTTCATAATAAGGGCCGATTCAAGTGAACCTTTTCAACGACCTTGTTCAAGATGTGCCAATCCTGTTCAATTAACTGAAGCGAGTAGGTGTAAATGTTGTAACTCTGCAATTACCATTAATGAGATAGAGGATTGGCTGTATCttcaaattgaatataataacaCCCATCTTTTACATGGGGTTGTTCACTCCAATGGTTATGGTCACCTGCTTACCCTTAATGGGAGAGAAGGTGGTTCCAAATTTCTATCTGGATCTGATATTATGGGATTCTGGGACAGGCTTTGTGTTGCACTTTCAGTTAGGAAGGTTGGTGTGATGGATTTCTCTAGGAAGTTTGGGCTAGAATATCGGTTGCTTCATGCAATAACCAATGGGTGCTCTTGGTATGGCAATTGGGGTTATGAATTTGGTACTGGAAGCTATGCTCTTACTCAAGATGTTTACCAGAAAGCAGTGAAAACCCTGTCAAGCCTACCTTTGCCCTCTCTCTTGGTTCAGGGTCGTGGGGCTCGAACCCGCCTGCAGTCTGTCATTTTTCTGTACCAATCTTTGGCGACCACAGCCCTCGAAACAATCCAAGATCTCTTCTGTTTTTTGTTGACATTTATCAGCAAACCCCACAAGATCCTGATGACAAAAACATCTCAAGAGCATCCAAGCACCAACACTTGTAACGTGTTATGTGCTTGGACGAGGAATGATGTTGAGAAAGTCCAACAAGCTATTGTAGAGGTGCTGCTGGCATTAGGGGCTAGCAAGGAGGAGAACTGGGTGAGCTGGCGTGCGCTCAAGGGTGCCGTGTCCAAAGGGGCTGCATCTCTAGATCTTGTAGACTACGGTCTCAAGCACTTGGGAGGGAAATTAGCCCCCAATGGCATGGTCGTTTTTTCAAGATGCAATCCCATTTCTAATGCTGTGGAGTTTAGGCTTGGTCTATTGAGCAACGCGTTAGATGGATCCAGTGCAATTTCTAGCCATCCATCAGAAGAGCAAGTGATATCTGATTTCAGATTCTTGATTGATTCCATTGTTTGCCCCGACAAAATGGCGAGCAATGCACCTCAGATTGTGAGGAAATTGGTGGCTGATTCGGTAACGAAGATCCTAGACTGTAAGCAGTTTGTGAAGGACTACAAGCCTGAAAAGGTGGCAGCAGGGCTTCATCCAGCCATTAGGCTGTGGTGTAGTGTGGAGCTTTCTGATCAGCCTAGAGATCCTCCAACCCCACCTCCGGAGTTAATTATCTTGCGTGTGAATGCTACTCTTGATGACCTCAAGAGTGCAGTCACCAGTGTTTTCCAAGAAGTGTATGTGATGTACAAGAAGTTTCAAGCTGAGAAACTCCCAGAATTTGGATCAGTCGATGATTCCTACACCTTGAAATTCCTGCTTGGGACAAGTGGGTCTGTCCGAATTCAAGGTACATGCCCAACCAAATATGGGCTAAGCCGTTTCCGAATGGAGAAAGGAACCGAGGCATGGAAAGTTGATTGCCCTTGTGGAGCAAAGAATGACGATGGAGAAAGAATGTTGGAATGTGAAAATTGTGGTGTTTGGCAGCATAATAGATGTACTGGAATTGATGACTCCGATGATATTCCTTTACATTTTGTGTGCTTGAGATGCATCGACTCCAATgatattatgtgtgtgtgcgcgtgCCCCTCCCCCTTGGATTTGTTTCTGCTTTAA 2046 0.4457 MNERRLKQKRRVITDHCDFLSFPTAEFSIGKPFRSSVRRFLSHHTHLTLPSSLSPTLVTWQMLLQLKSFDGELGLSSTKMALDIIEENVIRTRSSIYCIQCRLFGWSEHPVCRKRYHFIIRADSSEPFQRPCSRCANPVQLTEASRCKCCNSAITINEIEDWLYLQIEYNNTHLLHGVVHSNGYGHLLTLNGREGGSKFLSGSDIMGFWDRLCVALSVRKVGVMDFSRKFGLEYRLLHAITNGCSWYGNWGYEFGTGSYALTQDVYQKAVKTLSSLPLPSLLVQGRGARTRLQSVIFLYQSLATTALETIQDLFCFLLTFISKPHKILMTKTSQEHPSTNTCNVLCAWTRNDVEKVQQAIVEVLLALGASKEENWVSWRALKGAVSKGAASLDLVDYGLKHLGGKLAPNGMVVFSRCNPISNAVEFRLGLLSNALDGSSAISSHPSEEQVISDFRFLIDSIVCPDKMASNAPQIVRKLVADSVTKILDCKQFVKDYKPEKVAAGLHPAIRLWCSVELSDQPRDPPTPPPELIILRVNATLDDLKSAVTSVFQEVYVMYKKFQAEKLPEFGSVDDSYTLKFLLGTSGSVRIQGTCPTKYGLSRFRMEKGTEAWKVDCPCGAKNDDGERMLECENCGVWQHNRCTGIDDSDDIPLHFVCLRCIDSNDIMCVCACPSPLDLFLL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1913 681 PANTHER PHD FINGER PLANT-LIKE PROTEIN 2 665 - -
Ssu8g1913 681 ProSitePatterns Zinc finger PHD-type signature. 616 660 IPR019786 -
Ssu8g1913 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 673 IPR013083 -
Ssu8g1913 681 SUPERFAMILY FYVE/PHD zinc finger 606 663 IPR011011 -
Ssu8g1913 681 Pfam PHD-finger 616 661 IPR019787 -
Ssu8g1913 681 CDD PHD_MMD1_like 615 660 - -
Ssu8g1913 681 SMART PHD_3 615 661 IPR001965 -
Ssu8g1913 681 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 2 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1913 Ssu-Chr8 49874342 49879206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1913 81 660 PHD Transcription Factor Family AT5G22260 28.852 5.17e-81 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu8g1913 PHD 2.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1913 - - gmx:100780558 813.527