Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1901 ATGCTTGTTCAACTGGCCTTAAACCAAGCCCTCATCATGCAAAAACAAGCACGTGACTCAGACCAAACCAACCTGGCAACAAAGAACCACGGAACCGTACATGGTGATTGTGTGAAGCTCTATGGAGAAACCGTCTTCCACCTCAACCGCACCCTTGAATGCTTGCACGTGAAGCAAAACTGTCCACCGGTTGATGCACAAACGTGGCTCAGCACTGCCCTCACAAATATTCAAACGTGTCGACACGGCACTTATGAACTCCGCGGTGTTGAAGACTTCAAGGCTCCTGTTGTGAGCAACAACGTTACTGAGATGATAAGGAACAGCTTGGCCGTCAACATGGACCTCATGAAACATCACCACACGGTGGAGAAAACGGAAGACGCGTTTCCAAGTTGGTTTTCAACGCACGAGAGGAAACTGTTGCAGGCTTCATCGATAAAGGCACAAGTTGTGGTGGCAAAAGATGGTTCAGGGAACTTCGGGACTGTGCAAGATGCTCTCAATGCTGCAGCAAACAGAAGTGTCAAGACGAGGTTTGTGATACACGTGAAGAAAGGGGTGTATAGAGAGAATATTGAGGTGGCTGTGCTCAATGATAACATCATGCTGGTTGGTGATGGGCTGAGAAATACCATCATCACGAGTGGCAGAAGTGTTCAAGATGGTTATACCACTTATAGCTCTGCAACAGCTGGCATAGACGGCCTCCACTTCATTGCACGCGACATCACCTTCCAAAACACCGCCGGTCCACACAAGGGTCAAGCCGTGGCGCTCCGGTCGGCCTCGGACCTCTCCGTCTTCTACCGGTGCGCCATCATGGGCTACCAAGACACGCTCATGGCTCATGCACAGCGCCAATTTTACCGGCAATGCTACATCTACGGCACCGTTGACTTCATCTTTGGCAATGCCGCGGTAGTGTTCCAAAATTGTTACATTTTCGTAAGAAGGCCCTTAGAGGGCCAAGCCAACATGATCACGGCCCAAGGCCGAGGTGACCCATTCCAAAACACTGGAATTTCCATCCACGACTCTCAAATCCGGGCCGCATCAGACCTTAGGCCCGTTGTTGACAAATACAACACTTTCTTGGGTAGGCCATGGCAACAATACGCTAGAGTTGTGGTCATGAAAACGTTCATGGACACTTTAGTGAACCCATTGGGTTGGTCTCCATGGGATAATTCTGACTCTGCTCAAGACACACTTTTTTTTGGGGAGTATCAAAACTATGGGCCTGGAGCATCTACAACCGGTAGAGTAAAATGGCCCGGTTTTCATGTGATAACAAGCCCAGCTGAAGCGTCGCAGTTTACAGTCACGGGCCTCCTTGGTGGCCCAACATGGTTGGAAAGCTTAGCAACAATGGCCAAAAGTCTTGGCCTAATCATTGTCTTCCTATCCTTGTTTTCTCTGTCTTCCCCGGCCCTTTCAAGCATTTTCTCTAATGCCATTGATTTTTGGTGTAATAAAACCCCACATCCTCAAACATGCAAACATTTTGCCACAACAAACCATCATCACCTTCAAGATGGTATCCCAAAAAGTGCATTTCAATTCAAGAACCTCATCCTTAGAATTGCGATGGACCAATCAGTGAAAGCCCAAATTCACATCATGTGGTTGGGCTCCAAATGTGAAAGCAAGCAAGAAAAAGCAGCATGGTCAGATTGCATAACCCTCTATCAAGACACCATCAACATCCTCAACCAAGCACTTAATCCTACCAAACAAAGCACTAGCTATGATCTCCAAACATGGCTTAGCACAGCCTTAACCAACATTGACACATGCCAAACCGGGTTCCAAGAGCTTGGGGTTGGCAACAATGTTCTACCCCTCATTCCCAACAAGAATATCTCAGAGATCATAAGCGACTTCTTGGCTCTTAACAATGCTTCTTCATTAATTCCTCCGAAGACTAACAAAAATGGCTTCCCAAGATGGTTGTCACCCAATGATAGGAAACTTCTAGAGTCACCATCGTTATCACCAGATGTTGTGGTGGCTAAAGATGGTTCAGGGAACTTTAAGACCATCAAAGAAGCTTTGAAAGCAGTCCCCAAGATGAGTCGAAAGAGGTTTGTGATATATGTTAAGCGAGGGGTTTACAATGAAAACATTGAGATTGGGAATTCTTTGAAGAATATTATGCTGTATGGTGATGGTACAAGGCTCACCATCATTTCTGGTAGCAGAAGTGTTGGAGCAGGTTCTACCACTTTTAATTCGGCAACGGTTGCGATTACAGGAGATGGATTCATTGCACGTGGCATCACATTCCGCAACACGGCGGGCCCACAAAACCACCAAGCAGTGGCATTGCGTTGTGGTGCTGACCTCTCTGTCTTCTATCGCTGTGCATTTGAAGGCCACCAAGACACTCTCTATGTCCACTCCCAAAGACAGTTCTACAAGGAATGCCACATTTATGGCACAGTGGACTTCATCTTTGGCAACGCCGCTGTAGTCTTCCAAAGCTGCAACATATACGCAAGAAGGCCAATGCAAAAACAGAAAAATGCCATAACAGCACAAgGTAGAACAGATCCAAATCAAAACACCGGGATTTCCATCCAGAACTCGCGTGTTATGGCTGCTGAAGACCTAGTCCCTGTGCTGAGTTCCTTCAAAACCTTCTTGGGTAGGCCATGGAAGGAGTATTCAAGAACCGTGTTCTTGCAAACTTACCTTGATGCGTTGGTAGACCCTGCAGGGTGGTTGGAGTGGAAAGGCGATTTTGCCCTCGAGACTTTGTATTATGGAGAGTACAACAACCTTGGTCCTAGGGGTTCCACAAGAGGGAGAGTTAAATGGCGTGGTTACCGTGTCATGACAAGTGCAACCGAAGCATCCAAATTCACGGTTGAGAATTTTATTGCTGGGAGATCATGGTTACCAGCCACAGGCATTCCATTCTTCTCGGGACTCTATGATTAA 2946 0.4701 MLVQLALNQALIMQKQARDSDQTNLATKNHGTVHGDCVKLYGETVFHLNRTLECLHVKQNCPPVDAQTWLSTALTNIQTCRHGTYELRGVEDFKAPVVSNNVTEMIRNSLAVNMDLMKHHHTVEKTEDAFPSWFSTHERKLLQASSIKAQVVVAKDGSGNFGTVQDALNAAANRSVKTRFVIHVKKGVYRENIEVAVLNDNIMLVGDGLRNTIITSGRSVQDGYTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAIMGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCYIFVRRPLEGQANMITAQGRGDPFQNTGISIHDSQIRAASDLRPVVDKYNTFLGRPWQQYARVVVMKTFMDTLVNPLGWSPWDNSDSAQDTLFFGEYQNYGPGASTTGRVKWPGFHVITSPAEASQFTVTGLLGGPTWLESLATMAKSLGLIIVFLSLFSLSSPALSSIFSNAIDFWCNKTPHPQTCKHFATTNHHHLQDGIPKSAFQFKNLILRIAMDQSVKAQIHIMWLGSKCESKQEKAAWSDCITLYQDTINILNQALNPTKQSTSYDLQTWLSTALTNIDTCQTGFQELGVGNNVLPLIPNKNISEIISDFLALNNASSLIPPKTNKNGFPRWLSPNDRKLLESPSLSPDVVVAKDGSGNFKTIKEALKAVPKMSRKRFVIYVKRGVYNENIEIGNSLKNIMLYGDGTRLTIISGSRSVGAGSTTFNSATVAITGDGFIARGITFRNTAGPQNHQAVALRCGADLSVFYRCAFEGHQDTLYVHSQRQFYKECHIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKNAITAQGRTDPNQNTGISIQNSRVMAAEDLVPVLSSFKTFLGRPWKEYSRTVFLQTYLDALVDPAGWLEWKGDFALETLYYGEYNNLGPRGSTRGRVKWRGYRVMTSATEASKFTVENFIAGRSWLPATGIPFFSGLYD 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1901 981 Gene3D Invertase/pectin methylesterase inhibitor family protein 481 635 IPR035513 -
Ssu8g1901 981 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 117 IPR035513 -
Ssu8g1901 981 ProSitePatterns Pectinesterase signature 1. 693 712 IPR018040 -
Ssu8g1901 981 ProSitePatterns Pectinesterase signature 2. 812 821 IPR033131 -
Ssu8g1901 981 Gene3D - 662 979 IPR012334 -
Ssu8g1901 981 Gene3D - 144 461 IPR012334 -
Ssu8g1901 981 Pfam Plant invertase/pectin methylesterase inhibitor 3 111 IPR006501 GO:0004857
Ssu8g1901 981 Pfam Plant invertase/pectin methylesterase inhibitor 486 631 IPR006501 GO:0004857
Ssu8g1901 981 SMART PMEI_2 482 632 IPR006501 GO:0004857
Ssu8g1901 981 SMART PMEI_2 1 112 IPR006501 GO:0004857
Ssu8g1901 981 SUPERFAMILY Pectin lyase-like 665 978 IPR011050 -
Ssu8g1901 981 ProSitePatterns Pectinesterase signature 2. 295 304 IPR033131 -
Ssu8g1901 981 PANTHER PECTINESTERASE 465 978 - -
Ssu8g1901 981 PANTHER PECTINESTERASE 1 454 - -
Ssu8g1901 981 CDD PMEI-like_3 2 118 - -
Ssu8g1901 981 SUPERFAMILY Pectin lyase-like 147 454 IPR011050 -
Ssu8g1901 981 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 114 IPR006501 GO:0004857
Ssu8g1901 981 TIGRFAM PME_inhib: pectinesterase inhibitor domain 458 633 IPR006501 GO:0004857
Ssu8g1901 981 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 112 IPR035513 -
Ssu8g1901 981 CDD PMEI-like_3 490 635 - -
Ssu8g1901 981 Pfam Pectinesterase 668 964 IPR000070 GO:0030599|GO:0042545
Ssu8g1901 981 Pfam Pectinesterase 150 448 IPR000070 GO:0030599|GO:0042545
Ssu8g1901 981 PANTHER PECTINESTERASE 465 978 - -
Ssu8g1901 981 PANTHER PECTINESTERASE 1 454 - -
Ssu8g1901 981 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 485 634 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1901 Ssu-Chr8 49531966 49558705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1901 465 979 Carbohydrate Esterase AT2G45220 57.752 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1901 K01051 - gmx:100776412 940.258