Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1900 atgaataatttttctcatGTTCCCCCCGGTTTTAGGTTCCACCCCActgatgaagaacttgttgatTACTACCTAAGGAAGAAAATAACCTCAAGGAGGATTGACCTTGATGTCATAAAAGATGTTGACCTATATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGTCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTCTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCTAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATTATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTCTGTAGAGTATTCAAAAAGAGACTACCAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAGCCTAATTTGCCCTACCAGTTCCCATATCCTTGCAAGAAAGAGTTAGATTTGCCATACCATTTACCTCTACAACTTCCATTAGAGAGCCAAAAATTGCTTCAATCTGCCTCCAACTCAATGACACCATTTGGTATAGAAGAAAACCATCCTATGCAGCCAGCATCAATCATGCAACAAGTTCAACACACTGGTCAACAAAATTTTCAGGCAGTATTTGGAAACAATGCCAATGAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTGGTCAAGAAGATGCATCAAAAGACAATAGTTATTCAAACGCAGGCAACATCTTTCATCTgaagaacaataacaatattgaACAGTTGAGGGACTTGGACAAGGAAGAAATGATGCCGGAAAATGCTTCAACATCAAACTCAAGCTGTCCAATTGATATGTGGAAATAG 1023 0.3851 MNNFSHVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLPTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNLPYQFPYPCKKELDLPYHLPLQLPLESQKLLQSASNSMTPFGIEENHPMQPASIMQQVQHTGQQNFQAVFGNNANEQVADWRALDKYVASQLGQEDASKDNSYSNAGNIFHLKNNNNIEQLRDLDKEEMMPENASTSNSSCPIDMWK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1900 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 331 - -
Ssu8g1900 340 Gene3D NAC domain 16 158 IPR036093 GO:0003677|GO:0006355
Ssu8g1900 340 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Ssu8g1900 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 331 - -
Ssu8g1900 340 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Ssu8g1900 340 MobiDBLite consensus disorder prediction 321 340 - -
Ssu8g1900 340 MobiDBLite consensus disorder prediction 324 340 - -
Ssu8g1900 340 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1900 Ssu-Chr8 49507778 49509680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1900 1 340 NAC Transcription Factor Family AT1G12260 57.507 8.25e-134 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1900 NAM 4.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1900 - - gmx:100775867 620.542