Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1897 ATGGACCTGAAGCCAAATCTCACTCCTGTACTTACTGATGCCTTAACAAGGTCAAGGCTGGGTGTGCCTTCTGGTTTGTCACCTTACTCTCCTAAAGGGGCAACCTTTCCCCATGGTCCCTTGCTGGCAATTCCAAGGAAGAAGACAGGAATTCTTGATGATGTTCGTTCTAGCAGTTGGCTGGATGGCATGAAATCATCTTCTCCTACTCACAATAAAGTGTCCAAGGATGTTAGTCATGGGATTGGATCATTTGATGTTGCTTATAATACCTGGCTGCTAAAGTTTCCATCAGCACTTGCATCTTTTGATCAAATTACTAACTGTGCAAAAGGGAAGAGAATAGTATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGAACAATCCTGACTGCGCTTTCATGTCAGACAATATGCGTGCTGCTGTTAAAAAAGTGGCCGAATATTTTCCAACGGCAATAATTAGTGGAAGAAGCCGTGACAAGGTATATGAATTTGTTGGAGTAAGGGAGCTCTACTATGCTGGTAGCCATGGGATGGACATTATTGGTCCTCCTAGACAATCTATTTCTGATAATCACCCTGATTGCATTAGGTCTGCTGACAAGCAGGGTATTGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTGATGAGGTACTTGGGTTGCTCAAGGAGTGTACAAAAGACATTGAAGGAGCAACAGTTGAGAACAATAAATTTTGTGTGTCTGTACATTACCGCAATGTAGATGAGGAGAGTTGGCATATTGTGGGTCAACGTGTATGTGATGTTCTGAAGGAGTATCCGCGTTTGCGATTAACTCATGGGCGGAAGGTTTTAGAGGTCCGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTTGACAATTGTGATGACGTGCTAGCCATATATGTTGGAGATGACAGAACAGATGAAGATGCATTTAAGGTTTTGAGAGAAGTTAATAAAGGTTGTGGCATCTTGGTTTCTCCCGCCCCAAAAGAAAGCAATGCAATTTACTCTCTTCGTGATCCCTCAGAGGTCATGGAATTTCTGACATCACTTGCGGTATGGAAGTCAAGCATTCAAGCTCGCTGA 1146 0.4293 MDLKPNLTPVLTDALTRSRLGVPSGLSPYSPKGATFPHGPLLAIPRKKTGILDDVRSSSWLDGMKSSSPTHNKVSKDVSHGIGSFDVAYNTWLLKFPSALASFDQITNCAKGKRIVLFLDYDGTLSPIVNNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFVGVRELYYAGSHGMDIIGPPRQSISDNHPDCIRSADKQGIEVNLFQPAAEFLPMIDEVLGLLKECTKDIEGATVENNKFCVSVHYRNVDEESWHIVGQRVCDVLKEYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLDNCDDVLAIYVGDDRTDEDAFKVLREVNKGCGILVSPAPKESNAIYSLRDPSEVMEFLTSLAVWKSSIQAR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1897 381 Gene3D - 213 380 IPR023214 -
Ssu8g1897 381 Gene3D - 115 206 IPR023214 -
Ssu8g1897 381 CDD HAD_TPP 116 366 - -
Ssu8g1897 381 Pfam Trehalose-phosphatase 118 362 IPR003337 GO:0003824|GO:0005992
Ssu8g1897 381 SUPERFAMILY HAD-like 116 373 IPR036412 -
Ssu8g1897 381 TIGRFAM T6PP: trehalose-phosphatase 113 372 IPR003337 GO:0003824|GO:0005992
Ssu8g1897 381 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 117 335 IPR006379 -
Ssu8g1897 381 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 381 - -
Ssu8g1897 381 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 381 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1897 Ssu-Chr8 49423810 49426641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1897 81 377 Trehalose Biosynthesis Gene Families AT1G23870 25.559 1.51e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1897 K01087 - gmx:100783008 707.212