Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1895 ATGATTGGACTACTCGGAATAGGAGGCTCGGGAAAAACTACTTTGGCGAAAGAGGTGGGTAAGAAAGTTGAGGAGTTAAAACTTTTTGAGAAGGTTGTCATGGTAACGGTCTCTGAAACTCCAAATATTAGAAGCATCCAAGAGCAAATTGCTGATCAGTTGGATTGCAAGTTAGGGCAGGAATCGGACAACGGTAAAGCACGAAGACTATCAGAAAGATTAAGGAATGGCACAAATCTTCTAATCTTGGATGATGTATGGGAGTGGCTAAACTTTGAAGATATAGGTATTCCATTCAGTGAAAACAAGAAGGGTTGTGGAGTACTCCTAACAACTCGGGATAGAGTTGTATGCACTTCTATGCAATGCCAAAGTATAATTGAGCTCAATCTTATAGCTCGTGAGGAAGCTTGGACTTTGTTCAAATTGCATGCAAAATTAACTGATGACTCCCCATATGCTTTGAAAGGTgtggcaaaaaaaattgttgatgaatgtaAAGGATTGCCTATTGCAATTGTGACGGTGGGAAGCACACTAAGGGGGAAAACTTTAGAAGACTGGAAGTCAGCTTTGTCAAGACTACAATATTCCAAACCACTGGTTAATATTCCAAAAGGCCTAAGAAGTCCCCATGCCTGTCTTCAGTTAAGTTATGATATTTTGACAGATGAATTAGCCAAGTCCTTATTCTTGTTGTGTTCTATATTTCCAGAGGATCATGAAATTCACTTGGAAGATTTATTTAGATTTGGAAGGGACCTAGGGCTAACTAGGACTTTTGAAACAATAGAGAAAGCAAGGGAGGAGATGCATGTAGCTGTTAACATCCTCATGGATTCTTGTTTGTTGCTGCATGCCAAGAATGGAAGGGTGAAAATGCATGACATGGTTCGTGATGTAGCTTTGTTGATAGCATCTGAAAGGGGTCCAGCAATTTTGGCAAGCACTGCAATGGATCCAAGAACCATAAAGGATAAGAGAGCAATAATATCCTTATGGGATTTGCAAAATGACATCTCCTTTTTGGAAAGCCTACAAGCACTTGAGATTCTTGACTTGCGTGGCTCTTCTTTTGAAGAATTGCCTAATGGAATTGCAGCATTAAGGAAATTGAAGCTTCTGGATTTGTACCAATGtatgattaagaaaaataatgctTACGAGGTTATAGGCAGATGTTTGCAGCTAGAGGAATTATTGAGGAGGTATGTTATAATACACGATCGTTCTGACAAAATCAGTTATTTGCTACCTTCGATTTTGGAAGGGCGTAGACCATCTAGAGCTTTATGCGTAGATGGTTTTAATGCCCCGGTTCAAAGTTTCATATCATTGCCAATCAAGGATCTCTTTCTACGAGCAGAGTACCTTCATTTTAAGGACCTTCAGGGAGGTTACAAAAACGTAATCCCATTCATGGATCAAGAAGCCATGAATCAGTTGATTATTCTATTCCTCGAACATTGCCCAGAGATAGAATGCCTCTTTGATAGTACTATCATTTCCAACACCAATGTTGATCTGCTTCAGACTGAAGCTGCGTTCTCCAACCTAGCTACCTTAATATTGTTGTGCATGGATAGCCTTCAAAAAGTGTTTCATGACCCCTCTTTGCGATGCTCTCTCAATAATTTACAACAACTTCTCCTAAGAGACTGTAAAGAATTGTACAGCGTATCCTTTCCAAGGAACTCAAAGTTATGCAGTCTTAAGGTCTTGGCGGTATCAGGGTGCCCAAAGCTAACTTCTCTCTTCACGCCATCCGTTGTCCAAACTCTAGAGCTGCTAGAGTATGTAGAAACATCTGACTGCAGTGAATTGAAGCACATAATAGAAGAAGTCGAAGAAGGGCATGTTGATTATGTTAGCAGTCGAAGCAATACCTCTTCAATGCTCCCAAAATTAAAGAATCTTGTTATTGATAGATGCGAAAGTTGCGGTTTCGTTGAAATCCCTAATATTGCGGAAAATTGCGAGAAAATGCGGTTGATGCGGCTGCAATTGCGGTCACGATGCGGTTGcggtgagtccaaaaacctttatgttgcggtcgcaattgcggttgcggaccgcaatttagaaccatggttagAATATATATTGCCAGTTTGTTTTGCACGAGGGCTAGTAAGTCTGGAAAACCTGACCATTGGAGATTGCTGGAAGTTGAAGTATGTATTTGGCACTGAAAAGGAGCATCATCTTTCAGCGTACCTGCACCAGACTCACCATGAGACTAATATTGAGATAAATTTGGTTAATTTTGGTGAGCTCCGCTTGAGTTCATTACCAGAACACATTGATATTTGGCCTCAATATTGCCGTCCACGTTCACCTAATTTGAAAGAGTTAGCACTGAGTGTCCAAGATTGTCTAACTCTTCTGTGCGTAAGGTGCTGA 2403 0.3862 MIGLLGIGGSGKTTLAKEVGKKVEELKLFEKVVMVTVSETPNIRSIQEQIADQLDCKLGQESDNGKARRLSERLRNGTNLLILDDVWEWLNFEDIGIPFSENKKGCGVLLTTRDRVVCTSMQCQSIIELNLIAREEAWTLFKLHAKLTDDSPYALKGVAKKIVDECKGLPIAIVTVGSTLRGKTLEDWKSALSRLQYSKPLVNIPKGLRSPHACLQLSYDILTDELAKSLFLLCSIFPEDHEIHLEDLFRFGRDLGLTRTFETIEKAREEMHVAVNILMDSCLLLHAKNGRVKMHDMVRDVALLIASERGPAILASTAMDPRTIKDKRAIISLWDLQNDISFLESLQALEILDLRGSSFEELPNGIAALRKLKLLDLYQCMIKKNNAYEVIGRCLQLEELLRRYVIIHDRSDKISYLLPSILEGRRPSRALCVDGFNAPVQSFISLPIKDLFLRAEYLHFKDLQGGYKNVIPFMDQEAMNQLIILFLEHCPEIECLFDSTIISNTNVDLLQTEAAFSNLATLILLCMDSLQKVFHDPSLRCSLNNLQQLLLRDCKELYSVSFPRNSKLCSLKVLAVSGCPKLTSLFTPSVVQTLELLEYVETSDCSELKHIIEEVEEGHVDYVSSRSNTSSMLPKLKNLVIDRCESCGFVEIPNIAENCEKMRLMRLQLRSRCGCGESKNLYVAVAIAVADRNLEPWLEYILPVCFARGLVSLENLTIGDCWKLKYVFGTEKEHHLSAYLHQTHHETNIEINLVNFGELRLSSLPEHIDIWPQYCRPRSPNLKELALSVQDCLTLLCVRC 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1895 800 Gene3D - 132 218 IPR042197 -
Ssu8g1895 800 Gene3D Ribonuclease Inhibitor 457 681 IPR032675 -
Ssu8g1895 800 Gene3D - 219 303 IPR036388 -
Ssu8g1895 800 PRINTS Disease resistance protein signature 73 87 - -
Ssu8g1895 800 PRINTS Disease resistance protein signature 1 16 - -
Ssu8g1895 800 PRINTS Disease resistance protein signature 566 582 - -
Ssu8g1895 800 PRINTS Disease resistance protein signature 166 180 - -
Ssu8g1895 800 PANTHER DISEASE RESISTANCE PROTEIN-RELATED 4 353 - -
Ssu8g1895 800 Pfam NB-ARC domain 2 220 IPR002182 GO:0043531
Ssu8g1895 800 PANTHER DISEASE RESISTANCE PROTEIN RP 4 353 IPR044974 GO:0006952
Ssu8g1895 800 PANTHER DISEASE RESISTANCE PROTEIN RP 349 786 IPR044974 GO:0006952
Ssu8g1895 800 PANTHER DISEASE RESISTANCE PROTEIN-RELATED 349 786 - -
Ssu8g1895 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 234 IPR027417 -
Ssu8g1895 800 SUPERFAMILY L domain-like 335 659 - -
Ssu8g1895 800 Gene3D - 1 130 IPR027417 -
Ssu8g1895 800 Gene3D Ribonuclease Inhibitor 331 417 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1895 Ssu-Chr8 49351269 49354011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1895 2 305 WRKY Transcription Factor Family AT5G45050 25.325 2.81e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1895 - - gmx:102663325 832.787