Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1889 ATGGATAGGATTCAGGGGGCAGATGCGAATAATACATCTCAGCGTTCCTCGTCTTCAGTTGTTGCTCTGGCCATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGgcacttaataagtttgttccTGAGGGAATGATTATCTTCAAGCTGATACATGTCCATGCTGGTATAAAAGGAGTTCCAACAccaaTGGGAAATGTGATCCCTCTTTCACAAGTGCGTAATGATGTAGCAACTGCTTTCAAAAAGGACGTGGAGTGGCAAATAAATCAAATGCTTCTACCTTTCAAGAGAATGTGTGAGCAAAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCAGATGATGTGGCAACTGCAGTAGCAGAGGAAGTAGCTAAGGGTGCTATAACCAAACTTGTTGTTGGAGCTTCATCTCGTGGCATATTTAAAAGTAAACATAAGGGTATGTCTAAGAAAATCTCAGTATGCACTCCGAGATTTTGTACAATTTATGCTGTTTCAAAGGGAAAATTGTCCATACGGCCATCAGACACGCCAATTGATGGAATCATTATAGATGATGCTAGTGAAACCAGTTTATCCTCCAGCAGCTCATCAAACTACACTTCCACCTCTCAAACAGAATCTGCCTCAATTTCATCATATGCTGGTTTACACTCGTCTTCTCTAACAACACAACGATTTCAAGCTCTTTCAAGTATAAATCATGCCCTTCTAAGCACAACTCCTAGTTTAATTGACAGTAACCATTCTAGAGGCCAATCTATAGATCTTGGGAGAGAAAATACTGCTACAACTTCTGCCAGAAACTCAGACATTGATCATGCTTTAAGTCGGGCCTCTAGTTGCAAAAGCGTTATTTCCGATACTGAATCTTGGATTTATGATCAAAATTCTAGCAAGGATGTGCCACTAGCAACTGCACTTCCGTCACCTAATAGGCAGGCAAAATTAAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGACTGCATGCAGTAGCTCAAAGTGAGAAAATTGAAGCATCCCGAAAGCTGAATGACCTAAGCAAAAGACGATCAGAAGAAACCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAAGAATTAGCAAAactagaaaaagagaaatatcaaGATGCATCAAGAGAAGCTGCATATTTGAAAGAAAGTGCAGAAAGAGAAGCTGCAGAAAGGAAAGAAACGGAGTTGAAAGCCATTCGTGCtgcaaaagagaaagaaaagctGGAGGATGCTCTAAGTGGTACCATGCCCCAGTACCGGAAGTTTACATGGGATGAAATAGTCTCAGCTACTTCATCTTTCTCTGAAGATCTGAAAATTGGAATGGGAGCATATGGAATAGTGTATAAGTGCAGTTTGTATCACACAACTGTTGCTGTTAAAGTTCTCAACACTAATGAAAACCGCAAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGACATCCAAACTTGCTGCTTCTTCTTGGTGCGTGTTCTGATCATGGATGCCTTGTGTATGAATATATGGAGAATGGTAACTTGGAGGACAGACTACTACGAAAAAACAACACTGCCCCAATCCCatggtttgagaggtttcgaatAGCTTGGGAAGTTGCATCAGCTCTTGCCTTTCTTCATAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTGAAACCGGCAAACATCTTGCTTGGTCGTAACCTTGTCAGCAAAATTGGTGACATCGGCCTTTCTACAGTGCTCCATTCAGATAATTTGTCTACCATGTATAAGGACACGGCGCCTGTTGGGACACTCTGCTACATAGATCCTGAGTACCAAAGGACTGGGTCAATCTCTCCAAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACCGCAAAACCAGCAATGGCACTTGCTCATAAGGTTGAAACAGCCATTGATGGCGGGAGTTTAACAGATATATTGGATCTAGAGGCAGGGGCTTGGCCATTTCAAGAGACACTAGACATGGCTTTGTTAGGACTGAGCTGTGCAGAACTTCGGCGTAGAGACCGGCCCGATTTAAAAGATCATGTACTTCCAAAACTAGAGAGATTGAAAGAAGTTGCTGATAGGGCCCAAAATTCTGCTTCAATTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACGTATGATCGCAAAGCAATTGAAAAGTGGCTTGAAGAGAATGACAAATCACCAATGACAAACATGGCTTTACCTCATAAGCATCTAATTCCTAATTACACACTTCTGTCAGCAATTTTGGAGTGGAAGTCCAGAGAATCATGA 2421 0.4002 MDRIQGADANNTSQRSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHAGIKGVPTPMGNVIPLSQVRNDVATAFKKDVEWQINQMLLPFKRMCEQRKVHVDVVVIESDDVATAVAEEVAKGAITKLVVGASSRGIFKSKHKGMSKKISVCTPRFCTIYAVSKGKLSIRPSDTPIDGIIIDDASETSLSSSSSSNYTSTSQTESASISSYAGLHSSSLTTQRFQALSSINHALLSTTPSLIDSNHSRGQSIDLGRENTATTSARNSDIDHALSRASSCKSVISDTESWIYDQNSSKDVPLATALPSPNRQAKLNLELEKLRIELRHAQGLHAVAQSEKIEASRKLNDLSKRRSEETMKMKEIIAKEEKAKELAKLEKEKYQDASREAAYLKESAEREAAERKETELKAIRAAKEKEKLEDALSGTMPQYRKFTWDEIVSATSSFSEDLKIGMGAYGIVYKCSLYHTTVAVKVLNTNENRKSKQFQQELEILSRIRHPNLLLLLGACSDHGCLVYEYMENGNLEDRLLRKNNTAPIPWFERFRIAWEVASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLCYIDPEYQRTGSISPKSDVYAFGMVILQLLTAKPAMALAHKVETAIDGGSLTDILDLEAGAWPFQETLDMALLGLSCAELRRRDRPDLKDHVLPKLERLKEVADRAQNSASIVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENDKSPMTNMALPHKHLIPNYTLLSAILEWKSRES 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1889 806 MobiDBLite consensus disorder prediction 252 272 - -
Ssu8g1889 806 ProSiteProfiles U-box domain profile. 735 806 IPR003613 GO:0004842|GO:0016567
Ssu8g1889 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 806 IPR013083 -
Ssu8g1889 806 CDD RING-Ubox_WDSUB1_like 740 780 - -
Ssu8g1889 806 SMART Ubox_2 739 801 IPR003613 GO:0004842|GO:0016567
Ssu8g1889 806 CDD STK_N 20 172 - -
Ssu8g1889 806 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 147 - -
Ssu8g1889 806 Gene3D Transferase(Phosphotransferase) domain 1 525 735 - -
Ssu8g1889 806 Pfam Protein kinase domain 454 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1889 806 ProSiteProfiles Protein kinase domain profile. 452 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1889 806 SUPERFAMILY RING/U-box 734 804 - -
Ssu8g1889 806 Coils Coil 318 345 - -
Ssu8g1889 806 PANTHER OS02G0152300 PROTEIN 16 802 - -
Ssu8g1889 806 Gene3D HUPs 10 151 IPR014729 -
Ssu8g1889 806 SMART serkin_6 452 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1889 806 Coils Coil 404 429 - -
Ssu8g1889 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 16 802 - -
Ssu8g1889 806 Pfam U-box domain 737 804 IPR003613 GO:0004842|GO:0016567
Ssu8g1889 806 Gene3D Phosphorylase Kinase; domain 1 420 524 - -
Ssu8g1889 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Ssu8g1889 806 Coils Coil 366 394 - -
Ssu8g1889 806 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Ssu8g1889 806 SUPERFAMILY Protein kinase-like (PK-like) 433 707 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1889 Ssu-Chr8 49235061 49241908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1889 18 803 U-box Gene Family AT4G25160 53.293 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu8g1889 Pkinase 3.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1889 - - gsj:114409387 1357.81