Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1870 ATGGCTTTGAGAGTTATAGCGATTTCGGCGGTTTCTACAGTCTTAAGCTATGTGGGTCTGCAGTTTTGCACAGACTTGTCTTTGGATAAACTTAGATCAGATGGACTAATCGGTTGGAATTTAATTCACTTGAACAATGCCAGTCAAGACATTGAGTTGCCTCTGGGTTTGTACACCACCATAGGGCTACTGGTGAATTACATGATCAATTTATTTATCCTTCTCAATCTTTGTCTCAAGGCAATATTCTTCACGGAGTTATATGCTTCTGAAACTCGTAAATTGGTTGAACGTCTCattaattatgtcatttacAAGGGGACATTTCTACCACTGATTGTGCCACCAACAATATATCAAGCAGGTCTTTGGGCAACTTGGTTGACTGTGCTTTGTTCTTTGAAgATGTTTCAAGCTCTGGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCCACACCCTGGACATATCTTCGTGTATATTCagcattgttatttgttttcatgGTTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATGTAGAACACATGGGTCCTCTATGTATCTGTTACTGTTCTTCGAGCCATTCAGTATTGCTTTTGAGACCTTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGCTGCATCATTCAGCGTGCAATAGCAGTGATTTCCGGATGCCTAAACTGCTTAACACGTTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGGAACTTGGGGTTTTTCCTAGACATGGCAACATTTTTTATGGCACTTGGccattatttgtatatatggcGGCTCCATGGCATGGCTTTCCATCTTATAGATGCAGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCAATAATAAATCGCATAAAAGGCTTTATCAAGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCTATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCACCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTTCAGGTGGGCCTGAAAATGAAACAAACTCAAATGCAGGAACGATATCTAGTGATGAGCAACTTGCACGCCAAATAAGTGCAGGATTTGATCGGCCAAACTCTGCTAGACATACCATACCTACAGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTCCTTGGAGGGCTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCTGGTCCATCTACTGCTATCAGAACTGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGATGATTCTGCTTGGAACCTTTGGCCCATTAATCCCTCGCAGGCTTCTGCAAGTGGTTCAACCATTCCTCCCCCTGGTGGAAGATTGCCAGGAGGAACTGGTAGTTTGCATTTAAGGACTGCTTCACATTCTGCGAATGATAATGTTGCGAATATACTTGCCATGGCTGAGACTGTTCGAGAGGTTCTACCTCATATTCCAGATGATATAATATTCCAGGACTTGCAAAGGACAAATTCAGTCACGGTTACTGTCAATAATCTTCTCCAAATGTGA 1761 0.4134 MALRVIAISAVSTVLSYVGLQFCTDLSLDKLRSDGLIGWNLIHLNNASQDIELPLGLYTTIGLLVNYMINLFILLNLCLKAIFFTELYASETRKLVERLINYVIYKGTFLPLIVPPTIYQAGLWATWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMVDVLWIRLCLTICRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNSSDFRMPKLLNTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLIDAVLFLNIRALLSAIINRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFSGGPENETNSNAGTISSDEQLARQISAGFDRPNSARHTIPTGLYPNQTLNTPEGVPWRAAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFDDSAWNLWPINPSQASASGSTIPPPGGRLPGGTGSLHLRTASHSANDNVANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1870 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Ssu8g1870 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Ssu8g1870 586 Pfam Ring finger domain 336 380 IPR001841 -
Ssu8g1870 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Ssu8g1870 586 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 586 - -
Ssu8g1870 586 SUPERFAMILY RING/U-box 325 385 - -
Ssu8g1870 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Ssu8g1870 586 SMART ring_2 338 379 IPR001841 -
Ssu8g1870 586 Gene3D - 545 585 - -
Ssu8g1870 586 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 586 - -
Ssu8g1870 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1870 Ssu-Chr8 48776100 48784127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1870 69 421 C3H Transcription Factor Family AT3G16090 26.963 6.00e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1870 K10636 - gmx:100820578 1098.57