Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1860 ATGGGTTCTAAGAGGCAACTTTTGATGACACCATCAACAACTCCTCCTCCTAATAATAACTACCAGCAAGACCTTCGCACCACCATAATTCCTGAGCTTCCAAAATCAAAGTCAGGTTCGAGCAACGCTTTCAACCCATTTGAGAACTCTCTCAACTCATCATCACGCAAAAGTTCCATGTCCATTCACTCTTCTGGGAGCAAGAGCAACAACTCTATCCACGAGGTGAGTTTGAGCCGTTCAGGATCCAAACCTGTGAGGTATGGCTCAAAGGGTGCTGATTCTGAAGGACTCAGCACGTCACAGAAGGAGCTCAGAGACGAGGACGCAAGGTTGGTGTACATAAACGACCCTTTGAAGACCAATGAGGCTTTTGAGTTTGCAGGAAACTCTATCCGCTCAGCAAAGTACTCCCTCCTAACTTTCATCCCCAGGAACCTGTTTGAACAGTTCCACAGAGTTGCTTACGTGTACTTTCTCATAATTGCCATTCTCAACCAGCTTCCTCAGCTTGCAGTATTTGGAAGAGGTGTTTCCATCTTGCCACTGGCCTTTGTGCTGTTTGTCACGGCTGTGAAGGATGCGTATGAGGATTGGAGGCGGCACAAGAGTGATAGAGTTGAGAACAACAGGTTGGCGTCAGTTTTGGTGGACGGAAAGTTTGTGGAGAAGAAGTGGAGGGATGTTAGAGTTGGTGAGGTGATGAGGATCAAGGCAAATGAAACCATTCCTTGTGATATTGTGTTGCTCTCAACTAGTGATCCAACTGGGGTTGCATATGTGCAGACTATTAATCTAGATGGGGAGTCCAATTTGAAGACTAGATATGCAAAACAAGAGACACATGGCAAGGAGGCGTTTGGTGGGGTGATTAAGTGTGAGAAACCTAATAGGAACATATATGGATTTCTGGCTAACATGGAGGTTGATGGCAAGAAATTGTCACTTGGATCCTCCAACATTGTGCTTCGTGGATGTGAACTCAAGAATACTAGTTGGGCTGTTGGGGTTGCTGTGTATTGTGGGAGTGAGACCAAGGCTATGCTGAATAGCTCAGGAGCCCCATCTAAGAGGAGCAGGTTGGAGACACGCATGAATTTTGAGATCATTTTGCTCTCTTTCTTCCTTGTGGCATTGTGTACAGTCACCTCAGTTTGTGCAGCTGTGTGGCTGAAGCGCCACAAGGATGAGTTGGGTCTGTTGCCTTATTATAGGAAACTGGACTTTTCAGAACCGGGGGAAGTGGATAGCTATGAGTACTATGGATGGGGGTTGGAAGTTTTCTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATTCCTATTGCCCTGTACATTTCCATGGAGCTTGTGAGGGTTGGTCAGGCCTACTTCATGAGCCAAGACAACAGAATGTATGATGAGGCAACAAAGTCAAGGTTTCAGTGCAGGGCCTTGAACATTAATGAAGATTTGGGGCAGGTTAAGTATGTTTTCTCTGACAAAACTGGCACACTCACTCAGAACAAGATGGAGTTTCAATGTGCAAGCATCTGGGGGGTTGATTACAATTTTACAAAGGACAGCATGGAGGGTGAGCAAGTTGAACATTCTGTGGAAGCTCTGGCAACCTGCAACACTATTGTGCCTCTTGTTGTTGACACACCTGACCCTGATGTCAAGCTCATAGATTACCAAGGAGAATCACCAGATGAACAAGCATTAGCTTATGCTGCTGCTGCCTATGGTTTTATGCTCATAGAACGAACCTCGGGCCATATAGTCATTGATATTCACGGAGAAAGACAAAAGTTCAATGTCTTAGGTTTGCATGAATTTGACAGTGACAGGAAGAGGATGTCAGTTATATTGGGTTACCCTGACAATTCTGTGAaagtctttgtcaaaggagcaGACACATCCATGCTTAGTGTGATAGACAAGTCATTTAACAGGGACTTTGTACGAGCCACTGAAGCACATCTTCACTCTTATTCTTCCATGGGTTTGAGGACACTTGTTATTGGCATGAGAGACTTGAATGCTTCAGAATTTGAGCAATGGCATACATCCTTTGAGGCAGCCAGCACTGCTGTGTTTGGCAGGGCTGCTATGCTCCGCAAGGTTTCTAGCACTGTAGAGAACAATCTCAGCATATTGGGAGCATCTGCCATTGAAGATAAACTGCAACAAGGTGTGCCTGAGTCCATTGAGTCTCTAAGAATTGCAGGCATTAAAGTATGGGTTCTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGCTACTCCTCAAAGCTCCTAACAAGCAACATGACTCAGATTATAATCAATGGCAAAAACATAGAAGCATGCAAAAAAAGTTTGCAAGATGCCCTTGTCATGTCTAAAAAGCTCATATCCGCATCTGGGGTTGCCAACAATGCTGGAGGAAGTTCAGATGCAACTCCAGTAGCCTTAATTATTGATGGTACCAGCCTTGTGCATATTCTTGACAGTGAACTTGAAGAACAGCTATTTGAACTTGCAAGTAGATGTTCTGTTGTTCTATGTTGCCGAGTTGCTCCACTGCAAAAGGCTGGGATTGTTGCCCTTGTGAAGAATAGGACGTCTGACATGACATTAGCCATTGGAGATGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGGGTTGGCATCAGTGGACAAGAGGGTCGGCAAGCTGTAATGGCATCAGATTTTGCAATGGGGCAGTTTAGGTTTTTGGTTCCTCTCTTATTGATACATGGGCACTGGAATTACCAACGGCTGGGTTACATGATACTGTACAATTTTTACAGAAATGCTGTCCTTGTTCTTGTCCTATTTTGGTATGTCCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGCACTACGTTATATTCAATAGTCTACAGTTCATTGCCAACTATAATTGTTGGTATTCTAGACAAGGATCTTGGTAAAAGGACTCTCCTAAAGTATCCTCAACTTTATGGGGCTGGACAGAGACATGAGGCCTACAACAAGAAATTGTTTGTGTTGACAATGTTAGATACTTTGTGGCAAAGCATGGTTATCTTCTGGGCTCCCCTCTTTGCATATTGGAGTAGCACAGTTGATGTGGCAAGCATTGGAGACCTTTGGACTTTTGGAGTTGTTATTTTGGTTAATTTACACTTGGCCATGGATGTCATAAGGTGGTATTGGGTAACTCATGTTGTCATTTGGGGGTCTATTGTTGCAACTTTCATTAGTGTCATGATCATTGATGCTGTCCCCAATCTTCCTGGCTACTGGGCCTTCTATCATGCTGCTGGAACTAGATTGTTCTGGTTATTGTTGCTTGGAATCGTGATAGCAGCATTGCTTCCTCGTttggttgtaaaatttgtttatcaatattattttcctaatgATATTCAGATTTGTAGAGAAGCTGAAAAGATTGGGTATGAGAGAGTTGTTGAAAGTGGACAGATAGAGATGCTTCCTATCTCAAATAATCCACCAAGATAA 3522 0.4321 MGSKRQLLMTPSTTPPPNNNYQQDLRTTIIPELPKSKSGSSNAFNPFENSLNSSSRKSSMSIHSSGSKSNNSIHEVSLSRSGSKPVRYGSKGADSEGLSTSQKELRDEDARLVYINDPLKTNEAFEFAGNSIRSAKYSLLTFIPRNLFEQFHRVAYVYFLIIAILNQLPQLAVFGRGVSILPLAFVLFVTAVKDAYEDWRRHKSDRVENNRLASVLVDGKFVEKKWRDVRVGEVMRIKANETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHGKEAFGGVIKCEKPNRNIYGFLANMEVDGKKLSLGSSNIVLRGCELKNTSWAVGVAVYCGSETKAMLNSSGAPSKRSRLETRMNFEIILLSFFLVALCTVTSVCAAVWLKRHKDELGLLPYYRKLDFSEPGEVDSYEYYGWGLEVFFTFLMSVIVFQVMIPIALYISMELVRVGQAYFMSQDNRMYDEATKSRFQCRALNINEDLGQVKYVFSDKTGTLTQNKMEFQCASIWGVDYNFTKDSMEGEQVEHSVEALATCNTIVPLVVDTPDPDVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGERQKFNVLGLHEFDSDRKRMSVILGYPDNSVKVFVKGADTSMLSVIDKSFNRDFVRATEAHLHSYSSMGLRTLVIGMRDLNASEFEQWHTSFEAASTAVFGRAAMLRKVSSTVENNLSILGASAIEDKLQQGVPESIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTSNMTQIIINGKNIEACKKSLQDALVMSKKLISASGVANNAGGSSDATPVALIIDGTSLVHILDSELEEQLFELASRCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLFTAFTLTTAINEWSTTLYSIVYSSLPTIIVGILDKDLGKRTLLKYPQLYGAGQRHEAYNKKLFVLTMLDTLWQSMVIFWAPLFAYWSSTVDVASIGDLWTFGVVILVNLHLAMDVIRWYWVTHVVIWGSIVATFISVMIIDAVPNLPGYWAFYHAAGTRLFWLLLLGIVIAALLPRLVVKFVYQYYFPNDIQICREAEKIGYERVVESGQIEMLPISNNPPR 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1860 1173 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 524 1173 - -
Ssu8g1860 1173 ProSitePatterns E1-E2 ATPases phosphorylation site. 496 502 IPR018303 -
Ssu8g1860 1173 Gene3D - 560 692 IPR023299 GO:0000166
Ssu8g1860 1173 MobiDBLite consensus disorder prediction 1 79 - -
Ssu8g1860 1173 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 524 1173 - -
Ssu8g1860 1173 SFLD p-type atpase 478 923 IPR044492 -
Ssu8g1860 1173 SUPERFAMILY Calcium ATPase, transduction domain A 210 347 IPR008250 -
Ssu8g1860 1173 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 15 529 - -
Ssu8g1860 1173 Pfam Phospholipid-translocating P-type ATPase C-terminal 900 1140 IPR032630 -
Ssu8g1860 1173 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 727 IPR023299 GO:0000166
Ssu8g1860 1173 SUPERFAMILY HAD-like 489 927 IPR036412 -
Ssu8g1860 1173 Pfam Phospholipid-translocating ATPase N-terminal 113 178 IPR032631 -
Ssu8g1860 1173 SUPERFAMILY Calcium ATPase, transmembrane domain M 127 1139 IPR023298 -
Ssu8g1860 1173 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 843 958 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g1860 1173 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 426 515 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g1860 1173 Gene3D - 184 350 - -
Ssu8g1860 1173 PRINTS P-type cation-transporting ATPase superfamily signature 494 508 - -
Ssu8g1860 1173 PRINTS P-type cation-transporting ATPase superfamily signature 872 891 - -
Ssu8g1860 1173 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 525 1147 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu8g1860 1173 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 127 526 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu8g1860 1173 CDD P-type_ATPase_APLT_Dnf-like 129 1032 - -
Ssu8g1860 1173 Pfam E1-E2 ATPase 213 452 - -
Ssu8g1860 1173 SFLD Haloacid Dehalogenase 478 923 - -
Ssu8g1860 1173 Pfam Cation transport ATPase (P-type) 558 639 - -
Ssu8g1860 1173 MobiDBLite consensus disorder prediction 1 103 - -
Ssu8g1860 1173 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 15 529 - -
Ssu8g1860 1173 Gene3D - 712 912 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1860 Ssu-Chr8 48465841 48471471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1860 60 1173 Primary Pumps ATPases AT5G04930 66.379 0.0 1623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1860 K14802 - gmx:100813982 1996.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1860 8 48465841 48471471 Ssu8g1860 8 48465841 48471471 ECH