Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1856 ATGGCCGAAGTGATCAACATGCCCCCCGAATCCCTCGACCAGTCTCCCTCCGCCACCgctcctcctccgccgccggCCTCCGCCCCCACCGCCGACGATCTTCCTCCGCCGCCTCTCCCTCCGCCGCCGCGGCGCCGGGACCGCAGGGACGACCGCGATTTCGACCGCCACCCCAACCGCAGCCGCGGGAGCGATTACTACGACCGCGACAGGGACTTCAAGCGTCGCCGCAGCCCTAGCCCAGGCTACCGCGACCGCCGCTACTCTCCCCCGCCGCCGTCGCGCCGTTCGCCTCCGCCGTACAAGCGATCCCGCAGGGTCAGCCCCCGCGGCTATGGACCTGACGACAGATTTGGCTATGATTATTTCGGTGGCTATGAACGGGGAGTGGGTGGAAGGACTGGTTATGCAGATGAGAAGTCTTATGGCAGGCTTGCACATCGATCTGCTGGGGGATATCATAATGGGATTTCTGATGTGGATATAGGTCGCGGTTATGCAGATTTGCCAAGTGGAGGTGTACAAAGAGAGGGGTTGATGTCTTATAAACAATTCATTCAGGAGCTTGAAGATGATGTACTGCCAGCTGAAGCTGAGCGTAGGTATCAAGAGTACAAATCAGAGTATATTTCTACTCaaaaaagagcttattttaATGCTCATAAGGATGAGGAGTGgttaaaagataaatatcatCCAACAAATTTACTTACAGTAATTGAAAGGAGGAATGAAAATGCTCGACAGCTTGCAAAGGATTTTTTGCTTGATTTGCAAAGTGGTACATTAGACCTAAATCCTGGTTTGAACTCTTCTTCATCCAGTAAATCAGGGCAAGCCAGTGAGCCTAATTCAGAGGAAGAAACAGATGCTGGCATTAAACGAAGAAGACATGGTAGGGGACCTAATAAAGATAATGATTTCTCAGCTGCTCCGAAAGCTCACCCCATCAGTTCTGAACCTAGACGGATACAAGCAGATATTCAACAGGCTCAGGCTGTTGTTCGTAAGCTTGACTTGGAAAAGGGTAttgaagataatattttatgcaCCAGTGACCAcaataaaaatgatgataagGCTCACAGTGGATCTGTGGGCCCCATAATAATTATCCGGGGCTTAACATCTGTTAAGGGCTTAGAGGGTGTTGAGCTACTGGACACACTTATTACATATCTTTGGCGGATTCATGGTATTGATTATTATGGAATGACTGAAACTAATGAGGCCAAGGGTTTTAGGCATGTGAGACCAGAAGGAGCAGGGCatgaagaaacaagtaaatcagGGTCTGAATGGGAGAATAAACTTGATTCATTTTGGCAGGGAAGGTTGAATGGTCAGGATCCATTGGAAGTGATGACTGCCAAGGAGAAGATAGATGCTGCAGCAGCTGATGTGTTGGATCCATATGTAAGAAAAATTAGGGATGAAAAATATGGTTGGAAGTATGGTTGTGGAGCTAAGGGCTGCACAAAGCTTTTTCATGCGGCTGAATTTGTGCACAAACATTTGAAGCTAAAACACCCAGAGCTTGTGATGGAACTAACATCAAAATTTCGTGAGgatctttattttcaaaattacatgaaTGATCCTGATGCTCCTGGTGGAACGCCTGTCATGCAGCAACCTCAGAAGGATAGGCCTCTAAAGAGAAGATTAGGTTTGGATGGCCGATTGAAGGATGATCGTGGTAACCGTCAAGACCAGGACAGGAGTGACAGAATGAATGGAGATAGGCCTGACAGTTCCCCATCCCATGAAAGGCAGATGGGAAACCATGATGAAGCAATGTATGATGCATATGGAGGGCCTGGTGTACCTCCATTTACCTCAGATATGCCCCCTCCTCCACCAGTTTTGATGCCTGTACCTGGTGCTGGGCCTTTGGGACCTTTTGTCCCTGCTCCACCAGAAGTTGCAATGCAGATGTTAAGGGAGCAAGGAGGACCTTCGTCATATGATGCCTCGGGAAGGAAGATGCGATCTGGTCCTCATATGGGTGGACCAGCGCCTATAATTGCTGTCCCTCCGACCTTTAGACCTGATCCTCGACGAATGCGAAGTTATCAAGATCTGGATGCCCCAGAAGACGAAGTCACCGTGATAGACTATCGGAGCTTGTAG 2133 0.4674 MAEVINMPPESLDQSPSATAPPPPPASAPTADDLPPPPLPPPPRRRDRRDDRDFDRHPNRSRGSDYYDRDRDFKRRRSPSPGYRDRRYSPPPPSRRSPPPYKRSRRVSPRGYGPDDRFGYDYFGGYERGVGGRTGYADEKSYGRLAHRSAGGYHNGISDVDIGRGYADLPSGGVQREGLMSYKQFIQELEDDVLPAEAERRYQEYKSEYISTQKRAYFNAHKDEEWLKDKYHPTNLLTVIERRNENARQLAKDFLLDLQSGTLDLNPGLNSSSSSKSGQASEPNSEEETDAGIKRRRHGRGPNKDNDFSAAPKAHPISSEPRRIQADIQQAQAVVRKLDLEKGIEDNILCTSDHNKNDDKAHSGSVGPIIIIRGLTSVKGLEGVELLDTLITYLWRIHGIDYYGMTETNEAKGFRHVRPEGAGHEETSKSGSEWENKLDSFWQGRLNGQDPLEVMTAKEKIDAAAADVLDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVMELTSKFREDLYFQNYMNDPDAPGGTPVMQQPQKDRPLKRRLGLDGRLKDDRGNRQDQDRSDRMNGDRPDSSPSHERQMGNHDEAMYDAYGGPGVPPFTSDMPPPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSSYDASGRKMRSGPHMGGPAPIIAVPPTFRPDPRRMRSYQDLDAPEDEVTVIDYRSL 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1856 710 MobiDBLite consensus disorder prediction 265 286 - -
Ssu8g1856 710 MobiDBLite consensus disorder prediction 287 304 - -
Ssu8g1856 710 MobiDBLite consensus disorder prediction 265 323 - -
Ssu8g1856 710 Pfam Arsenite-resistance protein 2 426 609 IPR007042 -
Ssu8g1856 710 MobiDBLite consensus disorder prediction 1 121 - -
Ssu8g1856 710 ProSitePatterns Zinc finger C2H2 type domain signature. 487 510 IPR013087 -
Ssu8g1856 710 PANTHER SERRATE RNA EFFECTOR MOLECULE-LIKE PROTEIN 1 710 - -
Ssu8g1856 710 MobiDBLite consensus disorder prediction 532 611 - -
Ssu8g1856 710 MobiDBLite consensus disorder prediction 15 41 - -
Ssu8g1856 710 PANTHER ARSENITE-RESISTANCE PROTEIN 2 1 710 IPR039727 GO:0006397
Ssu8g1856 710 MobiDBLite consensus disorder prediction 651 696 - -
Ssu8g1856 710 Pfam SERRATE/Ars2, N-terminal domain 183 265 IPR021933 -
Ssu8g1856 710 MobiDBLite consensus disorder prediction 548 597 - -
Ssu8g1856 710 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1856 Ssu-Chr8 48405923 48414183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1856 83 710 C2H2 Transcription Factor Family AT2G27100 64.000 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1856 - - gmx:100817569 1127.85