Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1854 ATGGAGGCCCCAAAACGTTTGCCAATGGCTAGGAAAGGAACTGGATCCAAAGGACAGAGCATACAGCTATTTGCTAACCATTTTATAGTTGGCGTGGGCAAGAATGATGGCTACTTCTACCATTATAGTGTTGCCATGAGTTATGAAGATGGGCAACCTGTTGAAGCCAAGGGTATAGGGAGAAAGGTCCTAGATGAAGTTCGTAGAACATATGTGGAACTGAGAAACATAAGTTTTGCTTATGATGGCGAGAAAAGTTTATTTACGGTTGGTTCACTACCACATCAGAGCCTTCAATACCCTGTTGTGTTAGAGGATGTTTCATCAAGGAGGGTTGGAAGGAACGGAAGCCCTGATCAGAGTCTTAATGGAGATGCAAAAAGAATGAGGCGTCAATCCCGTTCTAAAACTATCAACGTGGATATCAAATATGCAGCCAAAATCCCAATGCAAGCAATTGCAAATGCATTGCGTGGTCAGGATTCTGAGAACTCTCAGGAAGCTCTGAGGGTTCTAGACATCATACTGAGACAACATGCTGCAAACCAGGGATGCCTCCTTGTTCGCCAATCCTTCTTTCATGACAATCCAAGAAATTACACTGAAATAGGAGGTGGTGTGCTAGGCTGCCGTGGTTTTCATTCAAGCTTCCGAGCCACACAAGGAGGTTTAACTCTCAATATTGATGTGTCAACTACAATGATTGTAAAGCCTGGTCCTGTGGTGGACTTCCTCCTCCAGAATCAGACAGTTCAGCATCCAAACCTAATTGATTGGACCAAGgCAAAAAGAATGCTGAAGAACCTAAGAATCAAAGCTAATGGAATTGAGTTCAAAATCACTGGGCTGAGTGATAACACTTGCAGGAATCAGAAATTTCTATTAAGGCAAAAGAATGGGAATGGTGAAGTGCAGGAAAGGGAAACCACGGTTTTTGACTACTTTACACGCCATAAAATGATTGGCTTGAACTACTCTGCTGATATGCCATGCATCAATGTTGGCAAACCAAAACGCCCGTCTTATTTTCCAATAGAGCTATGCGAATTGGTCTCGTTGCAGCGGTACACCAAGGCACTAACAAATTTGCAGAGGGCTCAGCTAGTGGAGAAGACAAGGCAAAAGCCCCAAGAAAGGAGAGCAGCTTTGGAAGATTCCTTAAGAAGCAGCAGATATGGTGACGAGGCTATGCTTCGCTCTTCTGGGATTACCATTCAACCTAACTTTACAAGAATCCAGGGTCGTATATTGGAACCCCCAAAGCTTATAGTTGGAAGGGGGGAGAACATCTTTCCCAGGAATGGGCGCTGGAATTTCAACCATAAGAACCTATATGCCCCTGTGAGTATTCAACGTTGGGCCATTGTAAACTTCTCAAGTGGGTGTGACACAAGACTCCTGATCCAACTCATTAAGAAGTGTGCTGCAGATAAAGGGATGGACATGAATAATCTATTCGAACGAGTAATTGAAGAGGATAGTCGCTTCAGACGTGATCCAGCACATGTCAGGGTAGAAAAAATGTATGCAAAGTTAAAGGCCACTCTGACCGATAAACCTcaatttctgttgtgtattctTCCAGAGAAAAAGAATTCTGATATTTATGGTCCTTGGAAAAGGAGAAATCTTGTTGAGGCAGGGGTTGTAACACAATGTATTGCACCAGCAAGAAAAATTAATGATCAATACATTACTAATGTACTCTTGAAAATTAATGCAAAGTTTGGCGGGATGAATTCCTATCTGTCAATAGAGCGTTATAGTTCCATTCCTCATGTTTCTGCTGTACCTACCTTAATCCTTGGTATGGATGTTTCTCACGGATCTCCTGGTCGATCAGATGTGCCCTCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCACGTTATAGAGCTGCAGTTCGCACTCAATCATCAAAAGTTGAGATGATCCAATCTCTATTCAAGCCTGTGTCTGATACTAAGGATGAGGGTATCATCAGGGAGGTGCTTATGGACTTCATAACTTCAGGAAAAGGGAAGCctcaacaaattataatttttagggatGGAGTGAGTGAATCACAGTTCAACCAGGTGCTCAACATTGagttaaatcaaataattgagGCATGCAAACATCTTGATGAAAAGTGGGATCCGAAGTTCACTTTGATTATTGCCCAGAAGAATCATCATACTAGGTTCTTCCAGGCCAATGCTAGAGAAAATGTTCCACCTGGAACCGTTATTGACAATACTATCTGTCATCCCAAAAACAATGACTTCTACTTGTGTGCTCAAGCTGGGATGATTGGGACAACTCGACCTACTCACTACCATGTTTTACACGATGAAATCGGGTTCACAGCTGATGAATTACAGGAACTAGTGCATTCTTTATCTTATACGTATCAGAGGAGCACAACTGCTGTATCGTTAGTTGCTCCCATTTGCTATGCCGACTTGGCAGCTGCGCAGATGGCACAATTTATGAAGTTTGCTGAACATTCTGAGACTTCTTCCAGCCATGGTGGACTCACATCTGTTGGTGAACCTGAAGTACCTCAATTACCACGCCTTCACAAAAATGTCATCAACTCCATGttcttttgttaa 2610 0.4184 MEAPKRLPMARKGTGSKGQSIQLFANHFIVGVGKNDGYFYHYSVAMSYEDGQPVEAKGIGRKVLDEVRRTYVELRNISFAYDGEKSLFTVGSLPHQSLQYPVVLEDVSSRRVGRNGSPDQSLNGDAKRMRRQSRSKTINVDIKYAAKIPMQAIANALRGQDSENSQEALRVLDIILRQHAANQGCLLVRQSFFHDNPRNYTEIGGGVLGCRGFHSSFRATQGGLTLNIDVSTTMIVKPGPVVDFLLQNQTVQHPNLIDWTKAKRMLKNLRIKANGIEFKITGLSDNTCRNQKFLLRQKNGNGEVQERETTVFDYFTRHKMIGLNYSADMPCINVGKPKRPSYFPIELCELVSLQRYTKALTNLQRAQLVEKTRQKPQERRAALEDSLRSSRYGDEAMLRSSGITIQPNFTRIQGRILEPPKLIVGRGENIFPRNGRWNFNHKNLYAPVSIQRWAIVNFSSGCDTRLLIQLIKKCAADKGMDMNNLFERVIEEDSRFRRDPAHVRVEKMYAKLKATLTDKPQFLLCILPEKKNSDIYGPWKRRNLVEAGVVTQCIAPARKINDQYITNVLLKINAKFGGMNSYLSIERYSSIPHVSAVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPQISRYRAAVRTQSSKVEMIQSLFKPVSDTKDEGIIREVLMDFITSGKGKPQQIIIFRDGVSESQFNQVLNIELNQIIEACKHLDEKWDPKFTLIIAQKNHHTRFFQANARENVPPGTVIDNTICHPKNNDFYLCAQAGMIGTTRPTHYHVLHDEIGFTADELQELVHSLSYTYQRSTTAVSLVAPICYADLAAAQMAQFMKFAEHSETSSSHGGLTSVGEPEVPQLPRLHKNVINSMFFC 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1854 869 Pfam N-terminal domain of argonaute 19 176 IPR032474 -
Ssu8g1854 869 Gene3D - 416 584 - -
Ssu8g1854 869 ProSiteProfiles PAZ domain profile. 278 352 IPR003100 GO:0005515
Ssu8g1854 869 Pfam Argonaute linker 1 domain 188 236 IPR014811 -
Ssu8g1854 869 SUPERFAMILY PAZ domain 233 391 IPR036085 GO:0005515
Ssu8g1854 869 CDD PAZ_argonaute_like 238 351 - -
Ssu8g1854 869 MobiDBLite consensus disorder prediction 110 135 - -
Ssu8g1854 869 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 3 868 - -
Ssu8g1854 869 Pfam PAZ domain 242 368 IPR003100 GO:0005515
Ssu8g1854 869 CDD Piwi_ago-like 402 824 IPR045246 -
Ssu8g1854 869 Pfam Argonaute linker 2 domain 378 422 IPR032472 -
Ssu8g1854 869 Gene3D - 590 869 IPR036397 GO:0003676
Ssu8g1854 869 Pfam Piwi domain 523 830 IPR003165 GO:0003676
Ssu8g1854 869 SUPERFAMILY Ribonuclease H-like 506 828 IPR012337 -
Ssu8g1854 869 Gene3D paz domain 232 356 - -
Ssu8g1854 869 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 868 - -
Ssu8g1854 869 SMART Piwi_a_2 522 830 IPR003165 GO:0003676
Ssu8g1854 869 SMART DUF1785_2 186 238 IPR014811 -
Ssu8g1854 869 ProSiteProfiles Piwi domain profile. 522 830 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1854 Ssu-Chr8 48297470 48338096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1854 11 869 Eukaryotic Initiation Factors Gene Family AT5G43810 34.749 5.58e-154 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1854 K11593 - gmx:100812218 1422.14