Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1853 ATGGGGTCTCAAGGTGGTGGGGGTGGTGATAATAATGGAAAACATTCACAACACCAGCTTTTGGTGTGGCAAAATTCAATGTACAGTCTCACACTTGATGAAGTTCAGAGTCAGTTAGGTGACTTAGGGAAACCACTAAGTAGTATGAACCTTGATGAGCTTCTAAAAAATGTGTGGACAGCCGAGGCAAACCAGTCCAGTGGTTTGGGCATTGAGGGTACAGCTCAAACTTGTGAAGCTGGGCTGCAGCGTCAGTCTAGTCTGTCATTAACTAGTGCTCTAAGCAGGAAGACTGTTGATGAGGTTTGGAGGGATATACAACAAAGCAAAGATAGCAATGAGAAGAGGTCTCAAGAGAGACATCCTACATTGGGAGAGATGACATTGGAGGATTTCTTGGTAAAAGCTGGGGTTGTTGCTGAAGCATCTTCTAATAGAAAAAATACTGGTCCTACAGTTGGTGTTGATTCAAATGTAGCAGCACCACAGTTTCCTCAGCATGGTCCTTGGATACAGTATCCACAACCACAATATCAGCATCCACAACAAAGCTTGATGGGGATTTATGTGCCTAGCCAGAATATAGCGCAGCCATTACACATGGGAGCAGGTGCTGCATCAGATGTTCCATACGCAGATGGTCAGGTCGCATTGTCTTCACCTGCTATGGGAACCTTGTCAGATAGTAGGAGAACTGGGAAAAAAAGGGGCACGTCAGAGGACATGGTAGAGAAGACTGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCACGTTCTAGAGCAAGGAAACAGGCTTACACAACTGAATTGGAGCACAAAGTCTCGTTATTGGAAGAGGAAAATGAAAAGCTGAGGAGACAGAAGGAGCTAGAGAAAATGTTATCAAGCTCTCCACCTCCTGAACCTAGATACCAGATTCGCCGAACAACATCAGCTTCATTCTGA 960 0.4521 MGSQGGGGGDNNGKHSQHQLLVWQNSMYSLTLDEVQSQLGDLGKPLSSMNLDELLKNVWTAEANQSSGLGIEGTAQTCEAGLQRQSSLSLTSALSRKTVDEVWRDIQQSKDSNEKRSQERHPTLGEMTLEDFLVKAGVVAEASSNRKNTGPTVGVDSNVAAPQFPQHGPWIQYPQPQYQHPQQSLMGIYVPSQNIAQPLHMGAGAASDVPYADGQVALSSPAMGTLSDSRRTGKKRGTSEDMVEKTVERRQKRMIKNRESAARSRARKQAYTTELEHKVSLLEEENEKLRRQKELEKMLSSSPPPEPRYQIRRTTSASF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1853 319 MobiDBLite consensus disorder prediction 284 319 - -
Ssu8g1853 319 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 317 IPR043452 GO:0003700|GO:0045893
Ssu8g1853 319 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 2-RELATED 16 317 - -
Ssu8g1853 319 Gene3D - 247 302 - -
Ssu8g1853 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700|GO:0006355
Ssu8g1853 319 CDD bZIP_plant_BZIP46 249 298 - -
Ssu8g1853 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 292 IPR004827 GO:0003700|GO:0006355
Ssu8g1853 319 SUPERFAMILY Leucine zipper domain 249 294 IPR046347 GO:0003700|GO:0006355
Ssu8g1853 319 MobiDBLite consensus disorder prediction 229 271 - -
Ssu8g1853 319 Pfam bZIP transcription factor 249 298 IPR004827 GO:0003700|GO:0006355
Ssu8g1853 319 MobiDBLite consensus disorder prediction 220 271 - -
Ssu8g1853 319 SMART brlzneu 245 301 IPR004827 GO:0003700|GO:0006355
Ssu8g1853 319 Coils Coil 272 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1853 Ssu-Chr8 48278114 48281382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1853 14 319 bZIP Transcription Factor Family AT3G56850 53.185 5.07e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu8g1853 bZIP_1 1.3e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1853 K14432 - gmx:100784924 513.842