Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1850 ATGTCACCCCCACcattttccttctctctttcccttctctttctcttcctcttagCACCATTACTCTTTGCTCAATCCCCACCTCCTCCTTCTGCTCCTTCTTCTGCTGCTGCCTGCAAAGGCACACTATATCCAAAACTATGCCGTTCCATTCTCTCAGCCATTCGTTCCTCCCCTTCTGACCCTTATGGCTATGGCAAGTTCTCCATAAAACAAAGCCTCAAACAGGCAAGGAAACTAGCCAAGGTGTTTGAGGACTTTCTCCAACGCCACCAATCATCTTCCTTGAACCATGCGGAGATCGCAGCACTTGGTGACTGCAAAGATCTCAACCATCTCAATGTGGACTACTTAGTGTCCATCTCTGAGGAACTCAAAGCTGCTGGCTCCTCAGACGCAGAGCTGGTTGAGAAAATAGAGAGCTACCTCAGTGCTGTGGCCACCAACCACTACACTTGTTATGATGGGTTGGTTGTGACCAAAAGCAACATTGCCAATGCCCTTGCCGTGCCACTCAAGGATGTGACACAGTTGTACAGTGTGTCACTTGGGTTGGTCACTCAGGCTCTTGACAAAAACCTCAAGAGGAATAAGACCCGCAAACATGGACTCCCCACCAAGGCCTTCAAGGTCAGGCAACCCCTTGAGAAGCTCATCAAGTTTCTTCGCACAAAGTATAGTTGCACCAAATTATCCAATTGTACTAGAACTGAAAGGATTCTTAAAGAAAGCGGAAGCCAAGGAATTTTATTATACGACTTTGTGATTGTGAGCCCTTATGGAATAGACAACCACACTTCAATTGGAGAGGCTATTGCTGCTGCACCCAATAACACCAAGCCTGAAGATGGATATTTCCTTGTGTATGTTAGGGAGGGATATTATGAGGAATATGTAGTTATTcccaaagaaaagaagaatatatTGCTAGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAACCATAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACCTTTGATAAGTACTTTATTCTTTCTAACTCTCCTCATTTGCAAAGACAAGTTTTTACTTGTCCTAATAACAAGTCAAGTGTTATTAAGAAAAACTATTCTTGGGATTTTGCTTAA 1125 0.4151 MSPPPFSFSLSLLFLFLLAPLLFAQSPPPPSAPSSAAACKGTLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQARKLAKVFEDFLQRHQSSSLNHAEIAALGDCKDLNHLNVDYLVSISEELKAAGSSDAELVEKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDVTQLYSVSLGLVTQALDKNLKRNKTRKHGLPTKAFKVRQPLEKLIKFLRTKYSCTKLSNCTRTERILKESGSQGILLYDFVIVSPYGIDNHTSIGEAIAAAPNNTKPEDGYFLVYVREGYYEEYVVIPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFDKYFILSNSPHLQRQVFTCPNNKSSVIKKNYSWDFA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1850 374 Pfam Plant invertase/pectin methylesterase inhibitor 37 184 IPR006501 GO:0004857
Ssu8g1850 374 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 188 IPR035513 -
Ssu8g1850 374 SUPERFAMILY Pectin lyase-like 254 339 IPR011050 -
Ssu8g1850 374 Pfam Pectinesterase 255 339 IPR000070 GO:0030599|GO:0042545
Ssu8g1850 374 SMART PMEI_2 30 185 IPR006501 GO:0004857
Ssu8g1850 374 PANTHER PECTINESTERASE 10 338 - -
Ssu8g1850 374 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 188 IPR006501 GO:0004857
Ssu8g1850 374 CDD PMEI-like_3 39 187 - -
Ssu8g1850 374 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 189 IPR035513 -
Ssu8g1850 374 Gene3D - 253 363 IPR012334 -
Ssu8g1850 374 PANTHER PECTINESTERASE 10 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1850 Ssu-Chr8 48127832 48131971 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1850 38 338 Carbohydrate Esterase AT3G10720 54.072 1.83e-106 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1850 K01051 - gmx:100816503 554.288