Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1849 ATGAATGTAGCTGTTGCTGGAGAAAGATTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGACCAGAAAAACACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTCTCCACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACACTCTATGTTCACTCTTTGAGGCAATTCTATAGGGAATGTTATATCTATGGCACTGTGGACTTCATATTTGGCAACGCTGCCGTGGTCCTGCAAGATTGTAACATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTCACAGCACAAGGAAGAACTGATCCCAATCAAAACACTGGCATTTCAATCCAAAACTGCACCATTGATGCTGCACCAGACTTGGCCGCAGCCTTGAATTCCACCCCGAGTTACTTAGGCCGGCCGTGGAAGGTGTATTCGAGGACTGTCTATCTGCAGTCATATATTGGAAATGTAATTCATCCTGCTGGGTGGTTAGAGTGGAATGGGACAGTTGGGTTAGACACTCTCTTTTATGGTGAGTTCAACAACTATGGACCTGGTTCTAACACTAGCAACAGAGTACAATGGCCTGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTTACAGTCCTTAATTTTACTTTGGGCAATACATGGCTTCCTGACACAGATATACCTTACACAGAAGGGCTACTAAGATAG 705 0.4397 MNVAVAGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECYIYGTVDFIFGNAAVVLQDCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAAALNSTPSYLGRPWKVYSRTVYLQSYIGNVIHPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1849 234 ProSitePatterns Pectinesterase signature 2. 66 75 IPR033131 -
Ssu8g1849 234 PANTHER PECTINESTERASE 3 232 - -
Ssu8g1849 234 Gene3D - 1 234 IPR012334 -
Ssu8g1849 234 Pfam Pectinesterase 3 217 IPR000070 GO:0030599|GO:0042545
Ssu8g1849 234 SUPERFAMILY Pectin lyase-like 3 231 IPR011050 -
Ssu8g1849 234 PANTHER PECTINESTERASE 3 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1849 Ssu-Chr8 48126844 48127548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1849 4 233 Carbohydrate Esterase AT3G10720 75.217 1.09e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1849 K01051 - gmx:100816503 458.759