Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1840 ATGTCCAAAACCAAagccaaaaagaagaagagcgATAGCGAGGAAGACGACGACGTATTCTACTACCGCTATAGCAGtgccaacccaacccaaaccaattcCAATTCCAATTCCAATTCCAATCCCAAAACCACCAAGGGATCTTCTTCGTCGTCCTTGGCTCCCTCGAAATCAACGTTGTACGTGTCGAACCTGGACTACTCCCTCACCAACTCCGACCTGCACACGCTGTTCTCCACCTTCGGCCGCATCGCGCGCGTCACCGTCCTCAAGGACCGCCGCACGCGCCTCAGCCGCGGCGTCGCCTTCGTCCAGTTCGTCTCCCGCGAAGACGCCCGCGCCGCCGCCGCCGTCATGCACCGCAAGGTCCTCAACGGCCGCACCCTCTCCGCCTCCATTGCCGCCGACAACGGCCGCGCCCCCGAGTTCATCCGCAGGCGCGTCTACCGCGACACCGCCCGCTGCTTCGAGTGCGGCGCCGAGGGCCACCTCTCCTACGACTGCCCCCGCAACCAGCTCGGCCCCCGCCAGCGCCCCGAGCCCAAGCGCCCCCGCCGAGGGCCCCACCACCGTCGCGACGATGACGGCGATGGGGACGAGTCGGATGGGGGCGGCGGTGCCGGCGGGGACCGCTTCGAGGACGACAATTGGGCGTCCGTCGTGGATGATGGCGCCGACGAGAGGTTGCTGGCGGGGAACCAGGATGATGTTGTGGctctaaagaagaagaagaagaaggccGGGTACTTCAGTGATGAGAGTGATGATGATGACTGTGATGGTTGA 786 0.5929 MSKTKAKKKKSDSEEDDDVFYYRYSSANPTQTNSNSNSNSNPKTTKGSSSSSLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRRTRLSRGVAFVQFVSREDARAAAAVMHRKVLNGRTLSASIAADNGRAPEFIRRRVYRDTARCFECGAEGHLSYDCPRNQLGPRQRPEPKRPRRGPHHRRDDDGDGDESDGGGGAGGDRFEDDNWASVVDDGADERLLAGNQDDVVALKKKKKKAGYFSDESDDDDCDG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1840 261 MobiDBLite consensus disorder prediction 24 55 - -
Ssu8g1840 261 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 258 IPR044598 GO:0000398|GO:0005689
Ssu8g1840 261 SUPERFAMILY Retrovirus zinc finger-like domains 138 171 IPR036875 GO:0003676|GO:0008270
Ssu8g1840 261 SMART rrm1_1 59 132 IPR000504 GO:0003723
Ssu8g1840 261 ProSiteProfiles Zinc finger CCHC-type profile. 154 170 IPR001878 GO:0003676|GO:0008270
Ssu8g1840 261 Gene3D - 1 142 IPR012677 -
Ssu8g1840 261 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Ssu8g1840 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 129 IPR000504 GO:0003723
Ssu8g1840 261 MobiDBLite consensus disorder prediction 241 261 - -
Ssu8g1840 261 MobiDBLite consensus disorder prediction 167 220 - -
Ssu8g1840 261 SUPERFAMILY RNA-binding domain, RBD 34 145 IPR035979 GO:0003676
Ssu8g1840 261 Gene3D - 144 192 - -
Ssu8g1840 261 MobiDBLite consensus disorder prediction 176 220 - -
Ssu8g1840 261 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 258 - -
Ssu8g1840 261 MobiDBLite consensus disorder prediction 22 55 - -
Ssu8g1840 261 Pfam Zinc knuckle 155 169 IPR001878 GO:0003676|GO:0008270
Ssu8g1840 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1840 Ssu-Chr8 47798612 47799397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1840 57 115 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 1.19e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1840 K13154 - gmx:100814914 275.404