Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1837 ATGAGTCAAACGACAAATGAGGTTGACAACAATGTGCCCTGTGATGATCAAACCACTGGGTCACGGTTAAATGACGAGGGCAATGGAGGAAGTGTTAGTGGAGTTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATAGTATTTTGGTGAACTATGTCAAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTACACAGGCCTGTCTCGTTGCGGAAAAAGTTGTCGACTGCGATGGGCCAATCACCTAAGGCCAAATTTAAAGAAAGGAGCATTTACCGTGGAAGAGGAGCGGTTGATTGCTGAACTCCACCTCCAAATGGGAAACAAATGGGCACGAATGGCAGCACACttGCCTGGTCGCAcagataatgaaataaaaaactactggAACACCCGGATGAAGAGGCGTCAAAGGGCTGGCTTGCCACTTTATCCTCCTGAAGTACTTTTGCGAGCATTTCAAGAGAGTCAGTGTGGCCAAGGTACTGGTGGAATCAATGATGGTGATAGAGGGCATCATGATCTGTTGGAGGAAAACAACTATGAGATACATGACTCAGTATTTGACAATTTGAAGGAAAATCAGGGAGTCTTACCTTTTGCGCCTGAGCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGGTCTTGGTTCTCCTCCATATTGTAATTTTATGCCATCAACATTACCTAACCATGATCATCCTCAAGAGTCAACAATGTCTTTTCTTGGTTCCAGTGCATTGAACAGGAATCCATTTTATCCATTTGACCATATTAAGGATAATACTTCTGATAAGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCACATGGCTCAATTTGTTACAGCCATTCACTAACAAATGACAATTCCTCTACTTCTAAGCTGACTTCTGAGGCTGCGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGTTGGGGTACCTCTCCCCCACCTCCATTGAACGAGTCTGCTGatgttttctttcattctcctcAGCCACCTAATGCACTAGACTCAGGTTGTTCATCACCACATAGTAGTGGCTTGCTAGATGCATTAATTTATCAGGCGAAGACTCTTAGTTGTTCAACTTCAAAGAATAATTGTTCTGACAAGAGTTCAAATTCATCTATTGCAATTCCTGGTGACAGAGCTGAGAGTTCTGCTTTGAACATGCACGAGACAGAATGGGTGGGTTATGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATCCTGAATGAGTATCCTGCTGTTAGCAGCAATGGAAACTCATGGGATGAATGGGAGCCTTTTCAGACCTTTAGTGGAAACAATGTAGAATTACAGTCAGTTGACCAGGTTTGGGCCCCCAAGAGTGAAAATCAATCAATGTCTCTGTTTAATCTCACTTGGCCCGATGTCTCGCTAGCTTCAGATTGGCACGAGCTGTATTCTGAGCCTGGCAAGAACCAAGACATCATGACTGATGCTAGTGATGATATCAGCAGACAGTAA 1551 0.43 MSQTTNEVDNNVPCDDQTTGSRLNDEGNGGSVSGVVLKKGPWTAAEDSILVNYVKKHGEGNWNAVQKYTGLSRCGKSCRLRWANHLRPNLKKGAFTVEEERLIAELHLQMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVLLRAFQESQCGQGTGGINDGDRGHHDLLEENNYEIHDSVFDNLKENQGVLPFAPELPDISANSILPNGLGSPPYCNFMPSTLPNHDHPQESTMSFLGSSALNRNPFYPFDHIKDNTSDKIAESFGLHSPLDHGASSHGSICYSHSLTNDNSSTSKLTSEAAKSELPSLQYPETEFGSWGTSPPPPLNESADVFFHSPQPPNALDSGCSSPHSSGLLDALIYQAKTLSCSTSKNNCSDKSSNSSIAIPGDRAESSALNMHETEWVGYADPVSPFGATSILNEYPAVSSNGNSWDEWEPFQTFSGNNVELQSVDQVWAPKSENQSMSLFNLTWPDVSLASDWHELYSEPGKNQDIMTDASDDISRQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1837 516 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Ssu8g1837 516 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 509 - -
Ssu8g1837 516 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Ssu8g1837 516 SMART sant 38 88 IPR001005 -
Ssu8g1837 516 SMART sant 91 139 IPR001005 -
Ssu8g1837 516 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Ssu8g1837 516 MobiDBLite consensus disorder prediction 1 28 - -
Ssu8g1837 516 Gene3D - 94 140 - -
Ssu8g1837 516 MobiDBLite consensus disorder prediction 324 360 - -
Ssu8g1837 516 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 509 - -
Ssu8g1837 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Ssu8g1837 516 CDD SANT 41 86 IPR001005 -
Ssu8g1837 516 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Ssu8g1837 516 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Ssu8g1837 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Ssu8g1837 516 Gene3D - 38 91 - -
Ssu8g1837 516 MobiDBLite consensus disorder prediction 1 34 - -
Ssu8g1837 516 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1837 Ssu-Chr8 47758429 47761887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1837 36 492 MYB Transcription Factor Family AT3G11440 42.857 9.51e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g1837 Myb_DNA-binding 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1837 K09422 - gmx:100805804 841.647