Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1832 ATGGGGTTTGAGGCATTGAATTGGTACTGCCAGCCAGCAGAAAACAGCATTTGGGCTAAAGCAGTGGATAGTGCTTTTGGGTCCTATACACCTTGTGCAATTAACACTCTTGTTATCTCCATTTCCAATTTGGTTCTTATGGGCCTGTGCTTATGCCGGATATGGCTTATCTCTTGCAATGCTAAAGCTCAGAGGTTttgtttgaattcaaattactataattatcttCTGGGAATGTTGGCTACTTATTGTGCTGCTCAACCTTTGTTGAGATTGTTAACTGGAAATTCAGCTTTCAACCTGAATGGAGAAACTGGCTTTGCTCCTTTTGAGATAACAGCTCTGATCATTGAAGTGCTTACTTGGAGCTCAATGATAACTCTCATCCTCTTGGAAACCAAGGTTTACATCAGACAATTTATATGGTTGGTGCGCTTTGGAGTTATATATGTTTTGGTGGGAGACATTGTAATGCTTAACCTTCTTCTGTCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTCTGTACATTAGCAGTGTCATCTGCCAGGTGTTGTTTGGTACCTTACTTCTCTTTTACATTCCCAATTTGGTTCCTTATTCTGGCCATGTAACAATGCAAGCTGAGCTACCTGACCATGGTGAATATGAACCTCTTTGTGAAGAAGATCAAGTTTGCCCTGAGAGGCATGCCAATGTATTCTCTAGAATATGTTTCGGATGGATAACTCCACTCATGAAGGAAGGCTACAGAAAACCCATAACTGAAAAGGATGTTTGGAAGCTAGACAAATGGGATCAAACAGAGACATTAACTGAGAAGTTCCAAAAGTGTTGGATGTTAGAATTTCAAAGCTCTAACCCATGGCTTTTAAGAGCATTGAACAATAGCCTGGGGAAAAGGTTTTGGTGGGGAGGCATCTTTAAGATTGGTATGGATCTTTCTCAGTTTGTGGGACCTATTTTGCTGAATCATCTCTTAGATTCAATGCAAAGAGGAGATCCATCTTGGACTGGTTACATCTACACCTTCTCTATGTTTGTTGGAGTGACAGTTCGTGCTCTTTGTGAAGCACAATATGCCCAGAATGTTATACGTGTTGGTTTTCGGCTTAGATCAACTTTGGTGGCTTCTATATTTAGAAAATCATTAAGGCTAACTAACGATGGTCGAAAGAAGTTCTCATCTGGGAAGCTTATGAATATGTTAACAACAGATGCCAATGCATTACAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCATTGTAGCTATGGTTCTCCTATACCAGCAACTAGGTGTTGCTTCACTTATCGGAGCATTAATGCTAGTTCTCATTTTCCCACTGCAGACATTTGTGATTAGCAAAATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTAATGCATGAAATTCTGGCTGCCATGGATACTGTAAAATATTATGCCTGGGAAACAAGCTTTCAATCTAGAATTCTAAGCATACGAGATGAAGAGCTATCATGGTTCCGCAAAGCCTATCTGCTATATGCTCTTAACACTTTTATACTAAACAGCATCCCCATTCTTGTGACGGTGACCACATTTGGAATGTTTACTTTACTGGGTGGAGAATTGACACCTGCAAGGGCTTTTGCCTCATTATCCCTGTTTGCAGTAGCAAATGCAAATGTCTCGTTGCAACGTTTGGAGGAACTGTTCTTAGCTGAGGAgcgaaatttaaaacaaaatccaCCTATTGAACCAGGACTTCCAGTTATCTCAATTAAGAATGGATACTTTTCATGGGATCCTAAGGAAGAGAAGCCGACATTATCAAATATCAATGTGGACATACCAATTGGCAGCTTAGTTGCAATCATCGGCGGTACAGGAGAAGGCAAAACATCACTTATTTCAGCAATGATTGGAGAGTTACCTCCTTTAGCCGATGGAAATGCTACAATCAGAGGCACTATTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCCACAgtttatgaaaatatattatttggatCAAAATTTGAATACGAACGATATCGGAAGGTCATCAATGTCACTGCTTTAGAGCATGATCTCAACTTACTACCTGGACGTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCTGTATACTCAGACtctgatgtatatatatttgatgaTCCTTTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAAGAACTGTATCAAGGAAGGGCTGCGAGGAAAAACTAGGATTCTTGTCACCAACCAGCTACATTTTCTCCCTCAGGTGGATAAAATCATTCTGGTTAGCAAAGGCATGATTAAGGAGCAGGGAACCTTTGAGGAGTTATCAAAAAGTGGGTTTCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAAAAGCAGATAATACTGAAGATAGAGATAGTCATGACAAGGCTAATGATTTACCATTGAACAATGAGGCAATTGTGGAATTACCAAATGATGCAAGCTAtgagaagaaaggaaaattacaaaaatcagTACTTATTAAGCAAGAAGAACGGGAGACAGGTGTGGTTAGCTGGAAAGTTATAATGCAGTACAAATCTGCTCTGGGAGGACTATGGGTATCTGTGGCACTTGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCATGCTGCCAAAAGATTGCATGATGCAATGTTAGATAAAATCCTCCGGGCTCCTATGGTATTCTTCCAAACTAATCCGGTCGGCCGCATAGTTAATAGGTTTGCAAAAGATATGGGAGATATAGATACTAATGTTTTTGATTTGGTGAACATGTTTTTGGGGCAAGTCTGGCAACTGCTTTCGACATTTGTTCTTATAGGCACTGTGAGCACCATTTCCCTATGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAACTTACATATATTACCAGAGCACAGCGCGAGAGGTGAAGCGCATGAATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAAGCACTGAATGGTTTGTCAAGCATTCGTGCTTATAAAGCATATGACAGAATGGCACACATTAATGGAAAATTCATGGATAACAACATCAGATTTACTCTTGTGAATATAAGTTCAAATCGTTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGTTGATAGCAACATCTGCTGTCTTGCAGAACGGAAGAGCTGCAAACCAGGCAATGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAGATCTCTTGAGTGGTGTCCTCACACAAGCAAGTAGAGCTGAAAACAGTTTAAATGCTGTTGAACGTGTTgacatgtatataaatttagaaactGAGGCTCCTGGTATAATTGAGACAAACCGTCCACCACTAGGATGGCCAACATCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATATCGACCTGAACTTCCTCCAGTGCTGCATGGATTGTCCTTTACAGTACCTCCAACTGAGAAGATAGGGGTAGTTGGGAGAACTGGTGCAGGAAAATCTAGCTTGCTTAATGCATTATTCCGAATTGTGGAACTACAAAAAGGAAGAATCATTATTGATGGTTGTGACATTTCTACATTTGGACTAGCAGATCTACGAAAAGTTCTTACTATCATACCACAATCTCCCGTTCTTTTCTCTGGTATGTTCCATGAACAGAATTCTTTTTCTATGTTAGATTTAGTTAATCAAACAtga 3840 0.3885 MGFEALNWYCQPAENSIWAKAVDSAFGSYTPCAINTLVISISNLVLMGLCLCRIWLISCNAKAQRFCLNSNYYNYLLGMLATYCAAQPLLRLLTGNSAFNLNGETGFAPFEITALIIEVLTWSSMITLILLETKVYIRQFIWLVRFGVIYVLVGDIVMLNLLLSVKDYCSRSALFLYISSVICQVLFGTLLLFYIPNLVPYSGHVTMQAELPDHGEYEPLCEEDQVCPERHANVFSRICFGWITPLMKEGYRKPITEKDVWKLDKWDQTETLTEKFQKCWMLEFQSSNPWLLRALNNSLGKRFWWGGIFKIGMDLSQFVGPILLNHLLDSMQRGDPSWTGYIYTFSMFVGVTVRALCEAQYAQNVIRVGFRLRSTLVASIFRKSLRLTNDGRKKFSSGKLMNMLTTDANALQQICQQLHGLWSAPFRIIVAMVLLYQQLGVASLIGALMLVLIFPLQTFVISKMRKLTKEGLQQTDKRVGLMHEILAAMDTVKYYAWETSFQSRILSIRDEELSWFRKAYLLYALNTFILNSIPILVTVTTFGMFTLLGGELTPARAFASLSLFAVANANVSLQRLEELFLAEERNLKQNPPIEPGLPVISIKNGYFSWDPKEEKPTLSNINVDIPIGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTIAYVPQISWIYNATVYENILFGSKFEYERYRKVINVTALEHDLNLLPGRDFTEIGERGVNISGGQKQRVSLARAVYSDSDVYIFDDPLSALDAHIAQEVFKNCIKEGLRGKTRILVTNQLHFLPQVDKIILVSKGMIKEQGTFEELSKSGFLFQKLMENAGKMEQKADNTEDRDSHDKANDLPLNNEAIVELPNDASYEKKGKLQKSVLIKQEERETGVVSWKVIMQYKSALGGLWVSVALANSYWLIISSLHAAKRLHDAMLDKILRAPMVFFQTNPVGRIVNRFAKDMGDIDTNVFDLVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYATYIYYQSTAREVKRMNSITRSPVYAHFGEALNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWLIATSAVLQNGRAANQAMFASTMGLLLSYTLNITDLLSGVLTQASRAENSLNAVERVDMYINLETEAPGIIETNRPPLGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSLLNALFRIVELQKGRIIIDGCDISTFGLADLRKVLTIIPQSPVLFSGMFHEQNSFSMLDLVNQT 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1832 1279 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 902 1263 - -
Ssu8g1832 1279 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 908 - -
Ssu8g1832 1279 SUPERFAMILY ABC transporter transmembrane region 289 567 IPR036640 GO:0005524|GO:0016021
Ssu8g1832 1279 Gene3D - 1157 1274 IPR027417 -
Ssu8g1832 1279 ProSitePatterns ABC transporters family signature. 726 740 IPR017871 GO:0005524
Ssu8g1832 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 564 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g1832 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 600 824 IPR003439 GO:0005524
Ssu8g1832 1279 CDD ABC_6TM_ABCC_D2 875 1148 IPR044726 GO:0140359
Ssu8g1832 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1164 1265 IPR027417 -
Ssu8g1832 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1136 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g1832 1279 CDD ABC_6TM_ABCC_D1 305 576 IPR044746 GO:0140359
Ssu8g1832 1279 SUPERFAMILY ABC transporter transmembrane region 897 1155 IPR036640 GO:0005524|GO:0016021
Ssu8g1832 1279 Pfam ABC transporter 618 753 IPR003439 GO:0005524
Ssu8g1832 1279 SMART AAA_5 627 807 IPR003593 -
Ssu8g1832 1279 Gene3D - 582 850 IPR027417 -
Ssu8g1832 1279 Gene3D ABC transporter type 1, transmembrane domain 284 581 IPR036640 GO:0005524|GO:0016021
Ssu8g1832 1279 Gene3D ABC transporter type 1, transmembrane domain 872 1154 IPR036640 GO:0005524|GO:0016021
Ssu8g1832 1279 CDD ABCC_MRP_domain1 600 800 - -
Ssu8g1832 1279 Pfam ABC transporter transmembrane region 306 567 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g1832 1279 Pfam ABC transporter transmembrane region 899 1090 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g1832 1279 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 37 908 - -
Ssu8g1832 1279 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 902 1263 - -
Ssu8g1832 1279 Coils Coil 818 838 - -
Ssu8g1832 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 823 IPR027417 -
Ssu8g1832 1279 Pfam ABC transporter 1190 1266 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1832 Ssu-Chr8 47567556 47581537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1832 584 835 Calmodulin-binding Proteins AT2G36910 27.037 3.34e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1832 - K05665 gmx:100811691 2249.55