Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1829 ATGACAGTAATAGCAGCAGTAGAATTAAGAATGCTCTATCTATGGTTGTTTACCGTCAAATTGATATACCTTCTTTGCATTGCTGCTGGTCAGAACAGTAGCAATACACAATCACTTGATTATAGATATGCTTGTTTGGACCAATCTTCTGTTCCTCCCTCTACCACATACCAAACCAACCTCAACAATTTGATCTCCTTACTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGTAATAGAACTTCAGGTGATGATCAAAACAACATGGTTTATGGACTCTACCTTTGCCGTGGTGATGTGAACACCAGCCTTTGTCACTCATGTGTCCAAAACTCTAGCAGGTTGCTCAAGCAGCACTGCCCCAATAATGCCTCGGCTATTTTGTGGTACCCCTTTTGTCTTCTGAGGTACTCAAACCAGAACTTCTTTGGCAACCTCACCACAAGACCAAGGATTCCTATGCTTGATGCGACGCAAAATTTTACCAGTGCTGGAGAATTTGACGGTGACGCTCGGATTTTGATGAATGGCTTGATACAAACGGGGTCAGAGACACTCTTAATGTTTAACACACATATGTTCAACATAAATGGCACTCAAAGAAGATATGGCTGGGTGCAGTGCAGCAGAGATATTACTAGTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAGGATGTTGAAAATTGTTGTGAGGAGAAGAAGGTGTGGCGTATCTTTTGTCCAAGTTGTGTTGTGATGTATGAGACTCAGCCATTCTTTTTGAATAATCAAAAAGCCAAAGAAGGGGAAAATACAAGGTGGTGGATTATAATAATCATTGTCATAGCTGGAATTGTCGTAGTAGGTGTATTGGCTGTCAGCACGTCCTACTGgttcttgaaaaagaaaattgACAAAAAAGCCATGCAAGAGGATagattaaattcaatattttctgAAGATCAGACTGATAAGGAGGAGACTATGAATGCCGACCTTCCTATAATGCCTTTGAATgctcttataaaaattacaaataatttttctgatgAATATAAATTGGGAAAAGGTGGATTTGGCTCTGTCTACAAGGGTGTTTTATCTGATGGAAGGCAAATTGCTGTCAAAAGGCTTTCAAAAACCTCAGTTCAAGGGGTGAAGGAATTCAAGAATGAAGTAATATTGATTGCAAAATTGCAGCATCGAAACCTTGTGAGACTACTGGCTTTCTGcattgagaaaaatgaaaagctgCTTGTTTACGAATACATGCCCAATTCAAGCCTCGACTTCCACTTATTTGATATAGAGAAGGGTGCAGGGCTGGATTGGAAACAACGATCAAACATTATTAATGGCATTGCCAAAGGGCTTCTATATCTTCACGAGGACTCTAGACTCAGGATTATCCACAGAGACTTGAAAGCTagcaatattttattagatcaTGAAATGAATCCAAAAATCTCAGACTTTGGACTAGCAAGAATATTTGGAGGAGACCAGAGGGAGGCAAATACAACTAGAGTTGTGGGAACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGCTTGTTTTCAGTGAAATCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATAAGTGGAAAAAGGAACAGTAAATTCTATCTGTCAGATCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAAAGCAAAAGTTTGGAATTGATGGATCCATTAATAGAAAAGTCATGTGTACGTAGTGAAGTTTTAAAGTGTATGCACATTGGTCTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAACAATGTCAAGTGTTATTCGTACGCTTGCAAGTGACATAGTGAGTCTTCCCATCCCCACACGCCCTGCATTTTCTATTGGAAGAGTTGTCACTGAACGAGGGTCTTCATCAAACACTTGTGGACATTATAGCTCTGCCAATGAATTAACCCTCTCCGAAGTAACACCTAGGTGA 1992 0.385 MTVIAAVELRMLYLWLFTVKLIYLLCIAAGQNSSNTQSLDYRYACLDQSSVPPSTTYQTNLNNLISLLSSDSATSNGFGNRTSGDDQNNMVYGLYLCRGDVNTSLCHSCVQNSSRLLKQHCPNNASAILWYPFCLLRYSNQNFFGNLTTRPRIPMLDATQNFTSAGEFDGDARILMNGLIQTGSETLLMFNTHMFNINGTQRRYGWVQCSRDITSEECRTCLSNMLEDVENCCEEKKVWRIFCPSCVVMYETQPFFLNNQKAKEGENTRWWIIIIIVIAGIVVVGVLAVSTSYWFLKKKIDKKAMQEDRLNSIFSEDQTDKEETMNADLPIMPLNALIKITNNFSDEYKLGKGGFGSVYKGVLSDGRQIAVKRLSKTSVQGVKEFKNEVILIAKLQHRNLVRLLAFCIEKNEKLLVYEYMPNSSLDFHLFDIEKGAGLDWKQRSNIINGIAKGLLYLHEDSRLRIIHRDLKASNILLDHEMNPKISDFGLARIFGGDQREANTTRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRNSKFYLSDQGQSLLIYAWNLWCESKSLELMDPLIEKSCVRSEVLKCMHIGLLCVQEDAADRPTMSSVIRTLASDIVSLPIPTRPAFSIGRVVTERGSSSNTCGHYSSANELTLSEVTPR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1829 663 CDD STKc_IRAK 350 615 - -
Ssu8g1829 663 Gene3D Phosphorylase Kinase; domain 1 304 419 - -
Ssu8g1829 663 ProSiteProfiles Gnk2-homologous domain profile. 150 255 IPR002902 -
Ssu8g1829 663 SUPERFAMILY Protein kinase-like (PK-like) 329 631 IPR011009 -
Ssu8g1829 663 Pfam Protein kinase domain 345 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1829 663 SMART serkin_6 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1829 663 ProSiteProfiles Gnk2-homologous domain profile. 39 143 IPR002902 -
Ssu8g1829 663 Gene3D - 38 143 IPR038408 -
Ssu8g1829 663 Gene3D - 154 255 IPR038408 -
Ssu8g1829 663 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 30 660 - -
Ssu8g1829 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Ssu8g1829 663 Gene3D Transferase(Phosphotransferase) domain 1 420 621 - -
Ssu8g1829 663 Pfam Salt stress response/antifungal 50 141 IPR002902 -
Ssu8g1829 663 Pfam Salt stress response/antifungal 160 252 IPR002902 -
Ssu8g1829 663 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Ssu8g1829 663 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 660 - -
Ssu8g1829 663 ProSiteProfiles Protein kinase domain profile. 344 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1829 Ssu-Chr8 47384762 47389823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1829 43 658 Receptor kinase-like Gene Family AT4G05200 42.195 3.81e-172 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1829 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1829 - - gmx:100798691 1084.32