Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1828 CTGCTGAGGTACTCAAACCAGAGTTTCTTTGGCAAACTCACCATGAGGCCGAGGATTCCGATGTTTGACGCGACACAAAATTTTACTAGTGCTGGAGAATTTGACAGTGATGCTAGGATTTTGATGAATGGTTTGATACAAATGGGGGCAGAGACACCCTTGATGTTTGGGACTCATATGTTCAACATAAATGGTACTCAAAGAAGGTATGGTTGGGTGCAGTGCAGCAGAGATATTACTAGTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAGGATGTTGAAAATTGCTGTGAGGAGAAGAAGGTGTGGCGTATCTTTTCTCCAAGTTGTATTGTGATGTATGAAACTCAGCCATTCTTTTTGAATGATACACTGCCTGCTGCGCCAGCTCCTCAGCAAGCCAAAGAAGGAGATAACACAAGGTGGTGGATTATAGTAATCATTGTCGTAGCTGGAACTGTAGTAGTTGCTCTGTTTGCTATCAGCACATACTACTTCTGGTgcttgaaaaggaaaaaggAGAAACAAGCTATTCAAGAGGATGGACTAAATTCAATGTTTTCTCAAGATCAAACCGACAAGGAGGAGAGTATGAACACTGACCTTCCAATGATGCTTCTGAGTACTATTCTAAAAagtacaaataatttttctgatcAACATAAATTGGGGAAAGGTGGATTTGGCCCTGTCTATAAGGGTGTTTTACCAGATGGAAGGCAAATTGCTGCTAAAAGGCTTTCAAAAACTTCTGTTCAAGGCGTTGAGGAATTCAAGAATGAAGTAATATTGATTGCAAAATTGCAGCATCGCAACCTTGTGAGACTGTTGGCTTGCTGCATTGACCAAAATGAAAAGCTGCTTATCTATGAATACATGCCAAATTCAAGCCTTGATTGCCACCTATTTGATAAGGAGAAGGGTGCCCATCTGGACTGGAAACACAGATTAAACATTATTAATGGGATTGCTAAAGGGCTTTTATATCTACATGAGGACTCTAGACTAAGGGTTATTCACAGAGACCTGAAAGCTAGCAACATTCTTTTAGATCATGAAATGAATCCAAAAATCTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAAAGGCAGGCAAATACAATTAGAGTTGTTGGAACTTATGGATACATGGCTCCCGAGTATGCTATGGAAGGCTTGTTTTCAGTGAAGTCAGATGTTTTCAGCTTTGGGGTTCTTTTGCTAGAGATCATCAGTGGAAAAAGGAACAGTAAATTCCATCTGTCAGACCAGGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAAAGCAAAGGTTTTGAATTGATGGATCCGTTAATAGAAAAGTCATGCGTAAGTAGTGAAGTTCTAAAGTGTATGCACATTGGTCTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAACAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAGTGAGTCTTCCTGTCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCACTGAACGAGAGTCTTCATCAAACACTTCTACGCATTATTCTGTCAATGAAGTAACGGTCTCCGAAGTGATACCAAGGTGA 1614 0.4021 LLRYSNQSFFGKLTMRPRIPMFDATQNFTSAGEFDSDARILMNGLIQMGAETPLMFGTHMFNINGTQRRYGWVQCSRDITSEECRTCLSNMLEDVENCCEEKKVWRIFSPSCIVMYETQPFFLNDTLPAAPAPQQAKEGDNTRWWIIVIIVVAGTVVVALFAISTYYFWCLKRKKEKQAIQEDGLNSMFSQDQTDKEESMNTDLPMMLLSTILKSTNNFSDQHKLGKGGFGPVYKGVLPDGRQIAAKRLSKTSVQGVEEFKNEVILIAKLQHRNLVRLLACCIDQNEKLLIYEYMPNSSLDCHLFDKEKGAHLDWKHRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQRQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRNSKFHLSDQGQSLLIYAWNLWCESKGFELMDPLIEKSCVSSEVLKCMHIGLLCVQEDAADRPTMSSVVHMLASDTVSLPVPTRPAFSVGRAVTERESSSNTSTHYSVNEVTVSEVIPR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1828 537 ProSiteProfiles Protein kinase domain profile. 219 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1828 537 Pfam Protein tyrosine and serine/threonine kinase 222 490 IPR001245 GO:0004672|GO:0006468
Ssu8g1828 537 ProSiteProfiles Gnk2-homologous domain profile. 16 121 IPR002902 -
Ssu8g1828 537 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 534 - -
Ssu8g1828 537 CDD STKc_IRAK 225 490 - -
Ssu8g1828 537 Gene3D Transferase(Phosphotransferase) domain 1 295 496 - -
Ssu8g1828 537 SUPERFAMILY Protein kinase-like (PK-like) 202 518 IPR011009 -
Ssu8g1828 537 SMART serkin_6 219 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1828 537 Pfam Domain of unknown function (DUF3403) 492 537 IPR021820 GO:0004674
Ssu8g1828 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Ssu8g1828 537 Gene3D Phosphorylase Kinase; domain 1 180 294 - -
Ssu8g1828 537 Pfam Salt stress response/antifungal 26 118 IPR002902 -
Ssu8g1828 537 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 1 534 - -
Ssu8g1828 537 Gene3D - 20 121 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1828 Ssu-Chr8 47353419 47356581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1828 1 537 Receptor kinase-like Gene Family AT4G05200 42.456 1.60e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1828 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1828 - - gmx:100798691 973.385