Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1822 ATGGCGTCATCACACCGTTTTGAAGCTTGTCCCTCCGAAGCCTCTAGCATCTCTGCCACCTCCGAAGGCACTTCTCATAAACCTTGTgttgaagaagagaaaaatgatgaGGTGACAATAATGAAGGAGAAGGGTGTCAAATCTAATCAACAAGATCAAGCTTCCAATTCCCATATGGTGTTGGATTTTGTTAAGCTCTCCAAGGATGAATCAATTCGTGGGTCGAAAGTGGAATTGGATTTTTTCAATCCAATGAACGTGGGGGGTTCATCCTCTACTAGGGTTAATAACACCGAAGGGAGAGATGAGAACCACAACGAGGAGAAACCATCAGAGGCTAAGACTTTCTCTTGCAACTTTTGCAAGAAAGAGTTTTCTTCTTCACAAGCCTTGGGAGGGCACCAAAATGCCCACAAACAAGAGCGTGCTCTTGCAAAGCGTCGCCAAGGGATTGATGTTGGTCCTTTTGGGCAccctcattttctttattatcctTATCCCTCACACTCCTTTTATGGATCCTACAATAGGGCACTTGGGGTTCGAATGGAGTCTATGATTCACAAGCCATCGTATCCTTCATCCTCGCTTGGTTTTAGGTTTGGTCAAGGGTGGTCAAGACAAGAGACGCTAAACCCTTCTCTTGATAGATTGAGGATGGAGGGTTTGCATGCAAATAGTGGAGTTAGGATTACGGGGAGTGATACAACTTTGAGGACACAAGATGATCGTGGTACTATTGGACACATTCCCTTCCTTGGAGAATCTTCTACAAATGTTGCTACCAAATCAAACTCACCCCCATTGACCATCGTGGGTGCTGATCATTCCAAGCAAGAAGGAACCTCCAGTCCTGATTCTTCTGATGGGATTGATTTATCACTTAAGCTTTGA 894 0.4284 MASSHRFEACPSEASSISATSEGTSHKPCVEEEKNDEVTIMKEKGVKSNQQDQASNSHMVLDFVKLSKDESIRGSKVELDFFNPMNVGGSSSTRVNNTEGRDENHNEEKPSEAKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKRRQGIDVGPFGHPHFLYYPYPSHSFYGSYNRALGVRMESMIHKPSYPSSSLGFRFGQGWSRQETLNPSLDRLRMEGLHANSGVRITGSDTTLRTQDDRGTIGHIPFLGESSTNVATKSNSPPLTIVGADHSKQEGTSSPDSSDGIDLSLKL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1822 297 MobiDBLite consensus disorder prediction 87 111 - -
Ssu8g1822 297 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 7 297 - -
Ssu8g1822 297 Pfam C2H2-type zinc finger 116 140 - -
Ssu8g1822 297 SUPERFAMILY beta-beta-alpha zinc fingers 113 143 IPR036236 -
Ssu8g1822 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Ssu8g1822 297 PANTHER ZINC FINGER PROTEIN JAGGED 7 297 IPR045320 GO:0003700
Ssu8g1822 297 MobiDBLite consensus disorder prediction 230 297 - -
Ssu8g1822 297 Gene3D Classic Zinc Finger 96 152 - -
Ssu8g1822 297 MobiDBLite consensus disorder prediction 9 25 - -
Ssu8g1822 297 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Ssu8g1822 297 MobiDBLite consensus disorder prediction 1 34 - -
Ssu8g1822 297 MobiDBLite consensus disorder prediction 252 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1822 Ssu-Chr8 47210014 47210907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1822 111 251 C2H2 Transcription Factor Family AT5G10970 42.466 2.42e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g1822 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1822 - - gmx:102661483 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1822 8 47210014 47210907 Ssu8g1822 8 47210014 47210907 ECH