Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1819 ATGAGGAAGAAGCTCGATACCCGTTTCCCCGCCGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGGAAGATAGCATTGGCGGTTCCTGTTTTAGTATCTAAAGCTCTGGAGCTAGTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGTTATAATGTCTTTGACTTTCTGAGAGACATTGTCAGCAGGGTTCCTGACTATGGGCACGGACATGGCCATGGCCATTCTGAGGCTGGAGCTGATGATCGTGCACTTTCAAAGAGAAGGAAAGCTGCTGGTGATGAGGGCAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCGTGAGTTGGGCCACACTAGCACTCCTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGTCGAGGGGTTCGAACTGTTGAAAGAGATATCTGTCATCAGCAGGTTGAATCTGAGCCTTGCACCTCTATTCAGCAAAGTAGCAATGATATTCCTAATACAAGTGTGCCAATAGATAATGGTCCGCAATCCAAAGAGCTATCAAAGGAGAACTTTTCTGTGCCAGAGGAAAGTACTCAATCTTTCCGTACATTGATCTGA 657 0.4612 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELVLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHGHSEAGADDRALSKRRKAAGDEGNDSDEEAKRSKMRELGHTSTPGRGRGRGRGRGRGRGVRTVERDICHQQVESEPCTSIQQSSNDIPNTSVPIDNGPQSKELSKENFSVPEESTQSFRTLI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1819 218 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Ssu8g1819 218 SUPERFAMILY Histone-fold 4 90 IPR009072 GO:0046982
Ssu8g1819 218 MobiDBLite consensus disorder prediction 153 167 - -
Ssu8g1819 218 PANTHER CCAAT TRANSCRIPTION FACTOR 1 205 - -
Ssu8g1819 218 MobiDBLite consensus disorder prediction 91 218 - -
Ssu8g1819 218 MobiDBLite consensus disorder prediction 168 218 - -
Ssu8g1819 218 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Ssu8g1819 218 MobiDBLite consensus disorder prediction 91 139 - -
Ssu8g1819 218 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1819 Ssu-Chr8 46915476 46921614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1819 1 182 CCAAT-HAP5 Transcription Factor Family AT3G12480 63.587 5.99e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu8g1819 CBFD_NFYB_HMF 1.5e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1819 K21752 - gmx:100810093 371.703