LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g1806	ATGAACGATGTCTCATGTGCTGCTGCCGCCGCTGCTGCTAACTCTTGTCTCCCCACCTCTTTGTTGGGTCTTCTTCACCTTCTCCACTCCAGAGGCAGATCCTCCGCTTGTGTCCACACTCTCTCCGAGCTTCTCAGGGACTTCGCCGCAAGAGAATTCAATGCCTTTCTGTGGCTCGCTCTCGTTGCTGTCACCACCCTTTTGCTCAGAAGGCTCTTCAGCCTCCTTAGGTTGTGGCACAGGGCTAGAACCATTCCTGGACCTCCCTCTCCCTCTTTCTTTGGACACTGCAAGCTCTTTTCCCGCGAAAATTTCACCTTAACTGATGTGTTGTCAGAATCACATCAAAAGTATGGACCAATTGTTAAGCTGTGGTTAGGTCCTACTCAGCTTTTGGTGTCGGTTAGGGATCCAGCACTAATTCAAGAGATGCTTATAAAGGCTGAGGATAAGTTGCCTTTTACTGGAAAAGTGTTTCATCTAGCCTTTGGGCAATCAAGCCTCTTTGCCCCTTCCTTTGAAAAGGTGCAAAAGAGAAGGGAATTGTTGGCAAACGAATTAAATGAAAGACTGTTGAAGAATGATGATCTGATTCCTATGAAGGTTGCAGACTTTATCAcagataaaatagaaaacatcaGAACCAAAGGAGGTATTGATTCTAGGTTGATTTCTCAGCATATGGCTTTCACCATAATGGGAGCCATGTTCTTTGGAGATGGCTTCTTGGCCTCGCCGAAGGCTGCAATATATGAGGAACTGTTTATGATGATTGCTAAAGATGCTTGCTTTTGGGCCTCCTATAATGTTACTCCTCTCTGGAGGCGTGGATTTTGGAGGTATCAATGCTTATGCACAAAGTTGAAATGCTTAACTCAAGACATCCTTCAACATTGCAGAAAAGGCTGCAAATTATTTGGCCATACTGACCAAGAAGAACATAGCGATAGTTCCGACAAAGAAATGAAGTCAGCACATGGTGCACAATGCTGTTCTGATGATGAGTTCCAAGATTACTATTTCTTTCGTGACCTTAAGGATCCTCAAGATGGTAAAGAAGAACCTTGTGGGAACATTATGCGCGTGACGTTTCATGGATGTCAAACTACATCTGCTTTAATCACCAATGTATTCACTAGGCTTGTCATGCATCCGGAAATACAGGATAAGGTTTATTCGGAGATTAGCATGGTAGGAAGAAACCCGTCAAAATATGAGCATGAAGATGTTTATAGGATGCCATTGTTATTGGCTACAATTTATGAATCTGCACGACTTCTGCCCACTGGTCCCATGCTACAGAGGTGTTCTTTGAAACACGACTTGTGCTTTGCAACTGGTTTAACCATACCTGCTGGAGCTGTACTTGTTGCACCTGTTGAATTGGTACAGAAGGATGACTCCAGTTGGGGGAGTGATGCAAGTGATTTTAATCCTTACCGATTTCTCTCAACCGGTACAAAGGGATCAGGTTCTGATGAAGACCTTTCTATTGAAGGATTCAGTTCATTTGTACTAAATGATCCAAATGAAAATGCAGCATTTCTTCCTTTTGGATCTGGTACACGTGCTTGCATTGGACAGAAATTTATCATCCAACTTGTTGCTTCAGTGTTGGCATCattgctaaaaaaatatgagATACGGCTTAACTCAGGATCAGATGATGACTCCAACACAACCTTGAAGAATAATCTTCTTCAGCATCATCCTTATTCACAAATATTATTCGTGAGAAGGGACcagtga	1749	0.4231	MNDVSCAAAAAAANSCLPTSLLGLLHLLHSRGRSSACVHTLSELLRDFAAREFNAFLWLALVAVTTLLLRRLFSLLRLWHRARTIPGPPSPSFFGHCKLFSRENFTLTDVLSESHQKYGPIVKLWLGPTQLLVSVRDPALIQEMLIKAEDKLPFTGKVFHLAFGQSSLFAPSFEKVQKRRELLANELNERLLKNDDLIPMKVADFITDKIENIRTKGGIDSRLISQHMAFTIMGAMFFGDGFLASPKAAIYEELFMMIAKDACFWASYNVTPLWRRGFWRYQCLCTKLKCLTQDILQHCRKGCKLFGHTDQEEHSDSSDKEMKSAHGAQCCSDDEFQDYYFFRDLKDPQDGKEEPCGNIMRVTFHGCQTTSALITNVFTRLVMHPEIQDKVYSEISMVGRNPSKYEHEDVYRMPLLLATIYESARLLPTGPMLQRCSLKHDLCFATGLTIPAGAVLVAPVELVQKDDSSWGSDASDFNPYRFLSTGTKGSGSDEDLSIEGFSSFVLNDPNENAAFLPFGSGTRACIGQKFIIQLVASVLASLLKKYEIRLNSGSDDDSNTTLKNNLLQHHPYSQILFVRRDQ	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g1806	582	PANTHER	CYTOCHROME P450 4C3-RELATED	58	563	-	-
	Ssu8g1806	582	SUPERFAMILY	Cytochrome P450	77	580	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu8g1806	582	Pfam	Cytochrome P450	86	572	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu8g1806	582	PRINTS	E-class P450 group I signature	515	525	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu8g1806	582	PRINTS	E-class P450 group I signature	115	134	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu8g1806	582	PRINTS	E-class P450 group I signature	525	548	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu8g1806	582	PRINTS	E-class P450 group I signature	374	400	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu8g1806	582	Gene3D	Cytochrome P450	77	573	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Ssu8g1806	582	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	518	527	IPR017972	GO:0005506\|GO:0016705
	Ssu8g1806	582	PANTHER	CYTOCHROME P450 FAMILY 4	58	563	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g1806	Ssu-Chr8	46648851	46657352	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g1806	85	560	Cytochrome P450	AT5G06900	23.265	6.85e-21	94.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g1806	-		-	gmx:100809563	999.193

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu8g1806	8	46648851	46657352	Ssu8g1806	8	46648851	46657352	ECH