Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1805 ATGGCCGCTGAAAAGCTTAGATGTTGTGCAAACTTCTTTGAGAACTCTAAACACCACTTTGCCATGATTGCTTTACAGTTTGGCTATGCAGGCATGAACATTATCACTAAGGTTTCCCTCAACCGAGGCATGAGCCACTATGTCCTCGTTGTTTATCGCCATGCCTTTGCAACTGCCGCCATTGCTCCATTTGCCTTCATCTTTGAAAGGAAAGCTCAACCAAGGATAACATTCCCaattttcttgcaaattttcaTCCTAGCTCTACTTGGGCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACATCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCCGCCATGACTTTTGTGATGGCAATTTTATGCCggATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCAAAGGTGGTGGGAACAACGTTGACCGTGGCTGGGGCCATGTTGatgaccttgtacaaaggccCTATATTGGAGATGGTTTGGACCAAGCATGCACTTCATCATAGGCAAAGTAATAATGCAACAAATACAACCACATCTTCGGACAAAGATTGGTTCATAGGCTCCATCCTCCTAATCATTGCCACCCTTGCCTGGGCATCCCTCTTTGTTTTACAGGCCAAAGCCATTGAAACCTACAAAAATCATCAGCTAAGCCTCACATCACTTATCTGCTTCATAGGCACTCTTCAAGCTATTGTTGTTACTTTTGTTATGGAACACAGACCATCTGTGTGGGCAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCTGGGATTGTTACATCAAGCATATCATACTACGTCCAAGGATTGGTAATTAAGAAGAAAGGGCCTGTTTTTGCAACTGCATTTAGCCCTCTGATGATGATCATTGTAGCCATCATGGGCTCCTTTATCCTTGCAGAGCAAATTTTTCTTGGAGGTGTGATGGGTGCCATCTTGATCGTTATAGGCTTATACTCAGTTCTTTGGGGAAAGCACAAAGAACAAGTGGAGAACAAAGTGGCAGAGGATATACCCTTGCCTGTAAAGGGTGCTCATGTTGATGGAAACCCAGGATCACTTACTGATTCCACTGATCATAAATCCGATTCCAACAACTTCTCTTCACATGTTATTAACGTATCTATCCCTGAGCCTCCCATGAAAGCTAACAATTAA 1197 0.4236 MAAEKLRCCANFFENSKHHFAMIALQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAFIFERKAQPRITFPIFLQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAILCRMEKINMKKVRCQAKVVGTTLTVAGAMLMTLYKGPILEMVWTKHALHHRQSNNATNTTTSSDKDWFIGSILLIIATLAWASLFVLQAKAIETYKNHQLSLTSLICFIGTLQAIVVTFVMEHRPSVWAIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGSFILAEQIFLGGVMGAILIVIGLYSVLWGKHKEQVENKVAEDIPLPVKGAHVDGNPGSLTDSTDHKSDSNNFSSHVINVSIPEPPMKANN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1805 398 MobiDBLite consensus disorder prediction 364 378 - -
Ssu8g1805 398 PANTHER WAT1-RELATED PROTEIN 14 373 IPR030184 GO:0016021|GO:0022857
Ssu8g1805 398 PANTHER WAT1-RELATED PROTEIN 14 373 - -
Ssu8g1805 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 340 - -
Ssu8g1805 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Ssu8g1805 398 MobiDBLite consensus disorder prediction 355 378 - -
Ssu8g1805 398 Pfam EamA-like transporter family 196 335 IPR000620 GO:0016020|GO:0016021
Ssu8g1805 398 Pfam EamA-like transporter family 21 159 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1805 Ssu-Chr8 46580045 46583287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1805 1 395 Nodulin-like Gene Family AT5G07050 66.015 0.0 529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1805 8 46580045 46583287 Ssu8g1805 8 46580045 46583287 ECH