Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1804 atgggtcTTGTGAGTAACTCAAATCCAAATCCATTGACACCAAAGGACTGTTCTGAAGGAATTTGCAGCATCTATTGTCCCCAGTGGTGTTACATTGTGTACTCTCCTCCCCCTCCTTCAATCCTGCTGGGTGCTAGTGATGATGATGACCCTCCAGGCTTTGAATTCTCTCCTCTCATAGTTGCCGTGATTGGAATCCTGGCAAGCACTTTCATCTTGGTCACTTACTATACCATTATCTCAAGGTTTTGCAGGCACAGGCACGAGGATGGGAGCAGCGAATTGGGTcaggtttcttcttcttcttcttcttcttcctctaatTCTGGCTTAGATGAGGCTCTCATCAAATCCATCACTGTTTGCAAGTACAACAAAGTTGGTGGGGTGGTGGAGGGTCACGAGTGTTCCGTGTGTCTGAGCGAGTTTGAAGAGAACGAGAGGTTGAGGTTGTTGCCCAGATGCAACCACGCCTTTCACCTCCCTTGCATTGATGCTTGGCTCAAATCTCATGCCACTTGTCCTTTGTGCCGTTCCACCATCACTGCTTCTCCAAATCCATCCGTGGaaccgccgccaccaccaccaccgccaggCATCATTGTTAATGCCTTGGAATACCAGCAAAGGACTAGCCATGTTGTTGTCATTGTTCAGAGTTCCGAGCAACAAGAGACAGTGGTTAGTTTTGGCGCTCAGGTTGTGCCCAAGCTGGCAATGGAAGATAGAGACCGCACGCAGGGCCGACCCAACGattgggTTTGA 765 0.4405 MGLVSNSNPNPLTPKDCSEGICSIYCPQWCYIVYSPPPPSILLGASDDDDPPGFEFSPLIVAVIGILASTFILVTYYTIISRFCRHRHEDGSSELGQVSSSSSSSSSNSGLDEALIKSITVCKYNKVGGVVEGHECSVCLSEFEENERLRLLPRCNHAFHLPCIDAWLKSHATCPLCRSTITASPNPSVEPPPPPPPPGIIVNALEYQQRTSHVVVIVQSSEQQETVVSFGAQVVPKLAMEDRDRTQGRPNDWV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1804 254 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 12 215 - -
Ssu8g1804 254 Pfam Ring finger domain 135 178 IPR001841 -
Ssu8g1804 254 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Ssu8g1804 254 SMART ring_2 136 177 IPR001841 -
Ssu8g1804 254 SUPERFAMILY RING/U-box 130 184 - -
Ssu8g1804 254 CDD RING-H2_PA-TM-RING 135 178 - -
Ssu8g1804 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 184 IPR013083 -
Ssu8g1804 254 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 215 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1804 Ssu-Chr8 46538901 46539833 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1804 3 184 C3H Transcription Factor Family AT3G03550 51.429 2.72e-63 200