Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1803 ATGCCTCCGAGGAAGAAGAAGCCCAATCTACAACCTTCCAAGTTCGGCATCCAGCACTTCTTCGATCGCGCCTCCCAAAGGCAGCCCCTGCAGCCCCACACCATTGTCCCCAACACCAACGCCAACATTGCCAACACCAACACCAACAATgcagaagaagaagccaacgaGGTGTCTCCGCAGACGCGCTTCAAATTCTCGCCCGGGATGTTGGTGAGGCAGAGCCAGGATGACGGGGTTGACGAAGTCACCTGGAGGATATCTCCCGTGAACGAAAGGCTCCAGGCGGTTTCGAAACACACGCCTGGAGTAATCAAGGCCTTGGCTGCCTCTTCCAGGATCAACTTGTCGCCAATCCGTGGCCGCGACGAGGAGGAGACTTGTCTGGTGGATAAGGTTACCTCGCCAACTCCCAAGGCTTCGGCTTCTCTAGTGCCACTGAGCTTCAAAAGGATAAACTCAGCCCGCGACGCGAGTGGACAGAGTCCCTTTAAAAGGATAAACTCGGCGCGCGACGATGTGAGTGGACGGAGTCCCTTCAGAACTCCCCCGTCTTTGTCTTGTCGCCCTGACAAGGTGCAGCTTGCCAAGGATATTGAACGCAGGGGACCGTGTGACCAGCTTTTTTTAAGACAGAACAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGCTACAGTTTGTAATAACAACACTTATTCCTTTAAACCTCAAGATCAAATTGCTAATGAGCTCCCTGTCAGAGTCAACCCTGCAGTAGAAAGGACCAAATCACATATACCTAAAGAGGTCATTGATGTCTTctccaattctaattatttGGTTTTGGAGGTATCTGAAAAACTTAGGTCTGCTGATTCATTTACTGCTCAATGCTCATACAAGGTGCTTCGTTTGCTAAATGAACAAACTGGGGAAGAGCGGGCTGTAAACTTGCAGAATGAATGGTCTTATAGTGTAATTGCTCCTGGAGATACTGTGCACATAATCAGTCAATTCGATGAAAGGGGGAATTGTGATATTGATCATgataaaaactttttgattgTACACCCAGATATTCTAGTGTCTGGAACACGGGTAGTTGCTGGCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTAAAATACAATGATTACTCAACTGCAGCATTAACTGGAACCATGCTGCACCAAATTTTTCAGGCTGGGCTTACAAAAGACAATCCTACGGTAAATTTTATGGAAGATTATGCAGAAGTGGTATTACAGAGAAACATTGAAAGTTTGTATGCATGTGGAGtaaatgaaaatgatgtTCGCAAAACCTTGAGTGATGCTATCCCTAGAATGTTAAGTTGGATCATGCAGTTCAAAAATATGGAGGAAAGAAAAAACCCCAGTGTCAATTTTGGATTTGATGATGGGCCAAAGAATGTTGGCATATCTGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAAATTCATTCACAAAAAGATGAACCGGAGGAAAAGATCATGCCGGTAGAGTTCAAAACTGGAAAAACACCAAACAGCCAGTCATCAGTAGAACACAGTGCCCAAGTAATGTTGTACGCTCTCCTGATGTCTGAAAGGTACCAGAAGACTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGCTCAGACACAGGGCATTGTGGTTCAAAGATCTGACTTAACTGGGCTAATAATGCGACGAAATGAACTAGCAAATGATATTCTTAGGGCATTAAATTTGCAACAACTTCCTCCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGTCATCTTAATGTGTGTAGCATTTATCATAAGGTAATGCTTTATCTTGGGAAGTGTAGAAACGTTGCAAACAGTTATATTATAACTGCTTTTGACATAGACCCTGCAAGATTCTCTTCTAGCCTCTCTGGAGTTTCTGATGCCTCTTCTAGTGCttcattgaaaaatgatttaGATTTCACACTTCGAAGTGGAGATCATGTGATACTTACTAATCAATCTAGCCATCAAATTATTGCAAAAGGGGTGATATCTGATATTAGTCCGATCCATGTGTCTGTTTCCTTTTCTAAGCGTTTACGAATTCCTGGGAGTTCTTCCACTGCACATGATCTCGTTCAGCAGGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCATTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCGAAGTGCTCATCTGCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGATCTATTGTTAGCCAGGATCCAGCGATATCCTATGTTTGgtcagagaagagtttgaatgATGACCAACGTAGAGCAATTCTCAAGATACTTACGGCAAAGGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACGTCCACATTGGTCCACGCTGTGAAAGCCTTGCTGATTAGAGGGACATCCATTTTGCTAACCGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTGCGAATCGGAAGACATGAAATAGTGAATGAGGAGGTCAGAGGACACTGCCTCTCAGCAACAAATGTACAAGGTGTGAAAGATATCAAAATAAGGTTGGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTCGGCATTTCTAGTCCCTTGCTTGCCAACATGAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACGTTTGCTTCGATGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAGAGTGCAGAGGCCCGAGAGAATGGCATGGGGATTAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCACAGGCTATTTTAGCTTTACAGAGTCAGTATCGTATGTGTCAGGCCATTATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATTTGAGGTAGCTAATGCAAAACTTGAGTTTTCGGGCTTAAACTGTGGTTTGCCTTGGCTAGAAGATGTTTTGAATCCTCGAAGACCTGCGATATTTATTGATACTGACAAGTTGCCTGCTTTAGAAGCAAGAGATCAGAAGATTGTAAATAACCCTATTGAAGCTCACATAATTGCTGAGATAGCAAAGGAATTGGTAAAAAATGGAATCGAAAGAGAACACATTGGCATTATAACTCCCTATAATTCACAGGCAAACCTCATCCGGCATGCTGCTTGCATGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGTATATTAGTATCTTTTGTAAGGTCTACCGAAAACCCGACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTAGGGTCTCGGAGAACTCTATCAAAAGTTCCTCTACTGAAACTTCTCATTAAGAAGGTTGAGGAGCAATCTGGAATTTTAAGTGTGTCTAAGAAGGATATCTATCGAAAATGTGAGCTTAAGAGATGTTCCCAAATGAGATGA 3672 0.4205 MPPRKKKPNLQPSKFGIQHFFDRASQRQPLQPHTIVPNTNANIANTNTNNAEEEANEVSPQTRFKFSPGMLVRQSQDDGVDEVTWRISPVNERLQAVSKHTPGVIKALAASSRINLSPIRGRDEEETCLVDKVTSPTPKASASLVPLSFKRINSARDASGQSPFKRINSARDDVSGRSPFRTPPSLSCRPDKVQLAKDIERRGPCDQLFLRQNKKALLELLDQVEDAIAVDDATVCNNNTYSFKPQDQIANELPVRVNPAVERTKSHIPKEVIDVFSNSNYLVLEVSEKLRSADSFTAQCSYKVLRLLNEQTGEERAVNLQNEWSYSVIAPGDTVHIISQFDERGNCDIDHDKNFLIVHPDILVSGTRVVAGSFSCPRRTVLDERLKYNDYSTAALTGTMLHQIFQAGLTKDNPTVNFMEDYAEVVLQRNIESLYACGVNENDVRKTLSDAIPRMLSWIMQFKNMEERKNPSVNFGFDDGPKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKIHSQKDEPEEKIMPVEFKTGKTPNSQSSVEHSAQVMLYALLMSERYQKTVDSGLLYYLQSAQTQGIVVQRSDLTGLIMRRNELANDILRALNLQQLPPMLQSPSICRGCRHLNVCSIYHKVMLYLGKCRNVANSYIITAFDIDPARFSSSLSGVSDASSSASLKNDLDFTLRSGDHVILTNQSSHQIIAKGVISDISPIHVSVSFSKRLRIPGSSSTAHDLVQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEKSLNDDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEIVNEEVRGHCLSATNVQGVKDIKIRLEQVKVVAVTCLGISSPLLANMRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPQAILALQSQYRMCQAIMDLSNALIYGDRLRCGSFEVANAKLEFSGLNCGLPWLEDVLNPRRPAIFIDTDKLPALEARDQKIVNNPIEAHIIAEIAKELVKNGIEREHIGIITPYNSQANLIRHAACMTSLEIHTIDKYQGRDKDCILVSFVRSTENPTSCAASLLGDWHRINVALTRAKRKLIMVGSRRTLSKVPLLKLLIKKVEEQSGILSVSKKDIYRKCELKRCSQMR 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1803 1223 CDD SF1_C_Upf1 1004 1197 IPR041679 -
Ssu8g1803 1223 PANTHER DNA2/NAM7 HELICASE FAMILY 674 1223 IPR045055 -
Ssu8g1803 1223 PANTHER DNA2/NAM7 HELICASE FAMILY 59 589 IPR045055 -
Ssu8g1803 1223 MobiDBLite consensus disorder prediction 158 185 - -
Ssu8g1803 1223 Pfam Domain of unknown function DUF83 521 630 IPR022765 -
Ssu8g1803 1223 Pfam AAA domain 981 1180 IPR041679 -
Ssu8g1803 1223 Pfam DNA replication factor Dna2 310 513 IPR014808 -
Ssu8g1803 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 803 1188 IPR027417 -
Ssu8g1803 1223 Gene3D - 730 901 IPR027417 -
Ssu8g1803 1223 Gene3D - 902 1001 IPR027417 -
Ssu8g1803 1223 Gene3D - 365 630 IPR011604 -
Ssu8g1803 1223 CDD DEXXQc_DNA2 803 1003 - -
Ssu8g1803 1223 Gene3D - 1002 1210 IPR027417 -
Ssu8g1803 1223 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 674 1223 - -
Ssu8g1803 1223 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 59 589 - -
Ssu8g1803 1223 Pfam AAA domain 804 894 IPR041677 GO:0004386
Ssu8g1803 1223 Pfam AAA domain 906 971 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1803 Ssu-Chr8 46504045 46533703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1803 679 945 Core DNA Replication Machinery Family AT1G08840 71.004 8.97e-116 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1803 K10742 - gmx:100799415 993.03