Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1802 ATGATCGAGAACAAGTTACAAAAGAACTGGGCTAAGGTGAAGCTTAATTTGGATGGTTCACTAGTTAATTCCATTGCTCAAGTATCTTGTGGAGGCTTTCTTCGAAACCGCCCCAAAGGATTTATTGGTGGATTTGTAGTGAAGCTAGTCCACTTGGGCGCGAAGGGTTATCCTCTTCTCAACTGGGTCACATTCGAATTGGAAGCGGCGCGGCCAAGGCAAGGAAGAAGTCAAAGAACGAATCGCGTTCCATATTTACCAATAACACACCTCAAGggagAAATGGAATCACCGCAGCCAGGTTCAAGAGGGGCAGAAGCACTTAAACATATGTCTCCTGGATCATCAATTTCTGTCGCATATCACCCATTTTTTGGACCTTATGATGACCTCCTCCTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGCATGAACGGGTGGTCTTGAGAGGACAGCCCGATGAAGATGCCGTTCTTTGTACTCAATCCAAAACATATGCTATGAAATTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCACCAGCAAACCATTCAGAATTTTATGAAAATCCGCAAAAGAATGATAATAATACTGATGAAGAGAAAGTTGTTGCACCTGTAATCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGGCAGCCCCCAGACTTGATAAACTTAAATCACTTCTGTCAGAAAAGTCTTACAGTTTTGAGGACTATGATATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGATTATATAACTGGGATGATCTTGTAGACAATATTCAAGCTAGTGATGAGGAATTAAGGTCTGGACTGCAGGCTCTTTCAGCAGTGGAGATTAATGGGTATTGGAGATTAGTAGACGGGAGTTACATGGACTTGATTCTGGGAATGCTTTTGAAAAATTCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCTGATGGATTTCCTGGGGTGCTTGCAAGGCATTGTTTGCATGTATATGGCAACAAAGCAAATGAGTGCATGCATAGCTGTGTCTGGAAGTTGGATGAGAAGCGAGTATGTGTACATTTTGCAAGAGAAATCCTGAAAGGGGGTAAGAGGAAGTTGGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGACGGAATGCAGCCCTCTTTTGATTTTGTGGAAGGAGAGGTATTAACAGAGAGAGTTGGAGTTGAGACATGGGTTCACGCCTTCAGTGTCGCTTCTTTGCCTACCACTCCAGCTGAGCGTTTCTCCATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAATGATCTGCAGCCCTATATCAGAGATCTGAAAGTACCAGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCACCTGATACAGAACCAGTTTTCAGTGCAAGATAG 1470 0.4218 MIENKLQKNWAKVKLNLDGSLVNSIAQVSCGGFLRNRPKGFIGGFVVKLVHLGAKGYPLLNWVTFELEAARPRQGRSQRTNRVPYLPITHLKGEMESPQPGSRGAEALKHMSPGSSISVAYHPFFGPYDDLLLLELDEKLLPDVLHERVVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANHSEFYENPQKNDNNTDEEKVVAPVIKVVSGNMELIEAAPRLDKLKSLLSEKSYSFEDYDMGNLEENQESRIGLYNWDDLVDNIQASDEELRSGLQALSAVEINGYWRLVDGSYMDLILGMLLKNSVLNDWSLNALNEDEVVSTLESDGFPGVLARHCLHVYGNKANECMHSCVWKLDEKRVCVHFAREILKGGKRKLESFMDEWRQKIPDGMQPSFDFVEGEVLTERVGVETWVHAFSVASLPTTPAERFSILFRERPKWEWNDLQPYIRDLKVPGLSSEGLLLKYTRRTQPSPDTEPVFSAR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1802 489 PANTHER SISTER CHROMATID COHESION PROTEIN DCC1-RELATED 110 489 IPR019128 GO:0007064|GO:0031390
Ssu8g1802 489 Pfam Sister chromatid cohesion protein Dcc1 132 455 IPR019128 GO:0007064|GO:0031390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1802 Ssu-Chr8 46476206 46494893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1802 104 489 C3H Transcription Factor Family AT2G44580 56.633 9.99e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1802 K11271 - gmx:100807595 692.575