Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1800 ATGCTAGTTAATGCTATAAGACAACAACAGTTCGAGAATCTCATGCTGGACAAGTTCCTAGGGTTGGCGCTGCCGGTTGGGGCCACCAAGGACCACCCCATAACGTGTCCGATGGGCACGGTGGCGCCGCCGCTCGAAGGGCTGAAACTGCCGCCGGTGCTGCTGTGCGTGGCGGAGATGGAGTACTATGAGGCCATGAAGAAGGCCAACAAAGATGTGGAACTTTTTGTTAGCAAAGGGATGACGCATAGCTTTTATCTGAATAAGATTGCTGTGGATATGGACCCCAATTTTAGTGCCCAAACCAATGCTCTCATTTTTCAGGGTCAAGGAGTTCATTGA 342 0.5088 MLVNAIRQQQFENLMLDKFLGLALPVGATKDHPITCPMGTVAPPLEGLKLPPVLLCVAEMEYYEAMKKANKDVELFVSKGMTHSFYLNKIAVDMDPNFSAQTNALIFQGQGVH 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1800 113 Pfam alpha/beta hydrolase fold 13 86 IPR013094 GO:0016787
Ssu8g1800 113 PANTHER CELL DEATH ASSOCIATED PROTEIN 15 106 - -
Ssu8g1800 113 SUPERFAMILY alpha/beta-Hydrolases 15 90 IPR029058 -
Ssu8g1800 113 PANTHER ARYLACETAMIDE DEACETYLASE 15 106 - -
Ssu8g1800 113 Gene3D alpha/beta hydrolase 6 99 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1800 Ssu-Chr8 46435653 46435994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1800 17 87 Carbohydrate Esterase AT5G16080 34.177 3.38e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1800 - - gmx:100806530 168.703