Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1795 ATGTCCACGGCGGCTCCGCTACCCTCCTCCACCGCCGCCAACACCGCCGCCGCTGGTGGCGTCGGACTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGCATCAAGGCCAACGGCCGCCGCCACACGCAAGAGAGGGAAAGCAGCGTCCGCGACTCGGATGGGCCCGTCGCGGTGGTCCTGGGCCTGGAAAAGCCCGCCATCGAGGCCTACCCGGAGATGGTGGTCGGAGAGAGCAGAAGGCTGCCCAAGCCCAACGAGGGCCCGTGCGCCATATGCCTGTGCGAGTATCTTCCCAAAGAGACCGTACGGTGCGTCCCGGAGTGCCACCACTGCTTCCACGCCGACTGCGTGGACGAGTGGCTGAGGACCAGTGCCACGTGTCCGCTGTGCCGGAACTCCCCCGCGCCGTCGCCGGCGGCCACTCCGCTCGCGGAACTGGTTCCACTGGCTTTCCACGCCAGGTGA 513 0.6784 MSTAAPLPSSTAANTAAAGGVGLGYGIAIAVSILVLISTIMLASYACVRIKANGRRHTQERESSVRDSDGPVAVVLGLEKPAIEAYPEMVVGESRRLPKPNEGPCAICLCEYLPKETVRCVPECHHCFHADCVDEWLRTSATCPLCRNSPAPSPAATPLAELVPLAFHAR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1795 170 CDD RING-H2_EL5_like 105 147 - -
Ssu8g1795 170 SMART ring_2 105 146 IPR001841 -
Ssu8g1795 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 155 - -
Ssu8g1795 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 152 IPR013083 -
Ssu8g1795 170 Pfam Ring finger domain 105 147 IPR001841 -
Ssu8g1795 170 SUPERFAMILY RING/U-box 99 153 - -
Ssu8g1795 170 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Ssu8g1795 170 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 24 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1795 Ssu-Chr8 46222282 46222794 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1795 18 170 C3H Transcription Factor Family AT5G07040 68.831 2.88e-73 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1795 - - lja:Lj3g3v0787250.1 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1795 8 46222282 46222794 Ssu8g1795 8 46222282 46222794 ECH