Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1793 ATGGCATCTAGCTCAATGTCATCCACTGGCTCATGGAGTGCCAAGGACAACAAAGCCTTTGAAAGGGCTCTTGCTGTCTATGACAAGGACACTCCCGACCGTTGGTACAATGTTGCTCAGGCTGTTGGTGGGAAGACTCCAGAGGAAGTGAAGAGGCACTATGAGCTCCTCCTCAGGGATGTTAGGCACATTGAATCAGGGCAAGTGCCATTCCCAAATTACAAGCAAAGCGGAGGGTCTGAAGAGGGGAAAAGGGCGAGAAACATGAAGCTCTAG 276 0.5072 MASSSMSSTGSWSAKDNKAFERALAVYDKDTPDRWYNVAQAVGGKTPEEVKRHYELLLRDVRHIESGQVPFPNYKQSGGSEEGKRARNMKL 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1793 91 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Ssu8g1793 91 SMART sant 8 60 IPR001005 -
Ssu8g1793 91 CDD SANT 18 58 IPR001005 -
Ssu8g1793 91 Gene3D - 2 71 - -
Ssu8g1793 91 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Ssu8g1793 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 91 IPR044636 GO:0003700
Ssu8g1793 91 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Ssu8g1793 91 MobiDBLite consensus disorder prediction 68 91 - -
Ssu8g1793 91 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Ssu8g1793 91 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1793 Ssu-Chr8 46158729 46159587 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu8g1793 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1793 - - gmx:100804396 164.851