Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1789 ATGGATTACCTTTACGGTTTTGCGTCTTCAATTTCAAGAGATTTGGTGTGTGGAGCAATAAATCAACTACGTTATCCTTGTTGCTTTAACAATTTTGTTCAAGAGCTTGCAAAAGAAGAAGACAATTTGATTGCAACAAGAGATAGTGTCCAAAACCGGGTTGCACATGCCAAGAAACAAACGAGAAAGACTGCTGAAGTTGGCAACAAGTGGCTGAAGGACGCTAACACTGATGCAAGCGACGTGAATCAGTTGCTAAAAGAGGCCCGAACAAAAAAGAGTTGCTGTTTTGGGCACTGTCCAAATTGGATTTGGAGATACCGTTTAGGAAAGAAGTTAGCAAATAGAAAAAGGGACCTTAAAAAGTGCATTAAGGAAGGTAGACAATATATAGAATTTGAGCACATTGCTATGCTTCCTTCTGGCactcattattttctttcagaAAAATGTTTGAACTTTGAGAGTAGACAACCTGCTTATGAGCAACTAATGGAAGCACTGAAAGATGATGAGGTCACCATGATTGGATTGTATGGGATGGGGGGTTGTGGTAAAACCACATTAGCAATGGAAGTTAGGAAGAAAGCTGAAGAAGAACATCTTTTTGAGGAAGTGCTTTTTGTGCCTGCGTCTAGTACTGTAGAAGTTCGAAGGATCCAAGAAAAGATTGCAAGTTCAATGCAGTATACGTTTCcagaaaatgaagaaatggaGAGAGCTCAACGCCTGTACATGAGACTAACCCAAGAAAACAAGGTTCTTGTGATTTTGGATGATGTGTGGGAGAAGCTTGATTTTGGTGCCATAGGGATTCCCTCCACTGAACATCACAAGGGTTGCAAGGTTCTCATTACCACTCGTTCAGAAGAAGTTTGTACTCTAATGGACTGCCAAAGAAAGATTCACCTGCCAATCTTAACGGATGAAGAAGCGTGGTCTCTTTTCCAAACGAAAGCTCTCATATCTGAAGGCACATCTGAAACCTTAAAGCATTTGGCAAGAGAGATTTCAGACAAATGCAAAGGATTGCCCGTTGCCATTGCAGCTGTTGCTAGCAGCTTGAAGGGCAAAGCTGAGGTGGTATGGAGGGTTGCATTGAATAGATTCACAAGTTCGAAACCAGTGAACATTGGAAAGGGTTTGCAAAATCCTTACACGTGCCTACAGTTAAGCTATGATAATTTGGATACTGAAGAAGCTAAATCACTTTTCCTGCTGTGTTCTTTATTCCCTGAAGATTCTGAAATTCCAATAGAACTTTTAACAAGATTTGCAATTGGGTTAGGTGTAGTTGGAGAAGTTGGCTCATATGAAGAGGCAAGGAATGAAGTGATTGCAGCCAAAATTAAGCTCATAAATTCTTGTTTATTGTTGGGTGTGGACCATAAAAGTGTCAAAATGCATGACTTAGTTCGCTATGTAGCCCGCAGGATAGCACGGGACGGGAATAAGATGATTGAGTGTACATTGGGAAAGAATGTGACTTTGGAACACAATTCAATGAGATATTTATGCTGTGAAAAAATTCCAAATGAATTAGACTGTTCCAGTCTTGAGTTTCTATACTTAGATACATATTTGGCAGTGTCAGATGGAATTTTCAAAGGAATGAAAATGCTCAAAGTTTTGTTTCTTTACAATAAGGGTAGATACAGAAGGCCATTGTTGGGGATGTCATTAAAATCATTGACAAATCTTCGTTGCCTACTCCTAGGTAACTGGGAATTAGGTGACATCTCATTTCTGGGTGATGTAAAGAAACTTGAAAGTCTTACATTGCACAATTGTTCATTCCTTGAATTACCAGATGTTGTGGTTACACAATTGACAAACTTGAGATTGTTGGATTTGTCGGAATGTGACATGAAACGGAGTCCTTTTGAAGTGATCGGAAGACACCCGCAACTAGAAGAACTGTACTTTGTTGATCATAGATCAAAATGGGATTTTTACAATGAACACACTGCTGAATTCTTCCAAAAGTTTAGAGTCCCCCAAGTATTGCAAAGGTATCACATACACTTGGGAATCATGTTTGCTGGTTTCCAAGAAGAGTTTCCTAATCGTCACAGAACCTTATTTCTTAGTTATTTGGATCCATCCAATGCAGCGGTTAAGGATTTGGCCAAAATGGCAGAGGTTTTGTGTCTAGCAAATATTGAGGGAGGTGCAAAAAATATTCTCCCTGGCATATTTCAAATAGAAGGAGGTATGGCTCATTTGATTGAGCTTCTGATACGTGACTCTGAGGAGATAGAGTGGTTGGTTGACACTAGCCAGCATTTGAGTGAGGTAGGAGCTCTCTTCTCCAACTTGCATTGGCTTAGAATCGAGCGCATGACACATTTGGCAGCATTGTACCATGGTTCTCTGCCTCCTGGTGGCCATTTTGAGAAATTAGAGGAGCTGTGTTTAAGTCATTGTCCAAAGCTGACTTGTCTTTTCACACATGCGGTTGCTCAAAATATGGTACAgttggaaaaattagaaataatatcCTGTCCTGGACTGAAGCATCTAGTGACTGATGATGACAGAGAGGAGATAAGTACAGATGGTAAAAGGTTGCTGTTCCCCAAATTAAAACGGCTCCATGTCAGAGAGTGTGACATGTTAGAATATTTAATCCCAATCACTTTTGCTCAGGGCCTTGTACAATTAGAGAGTTTGGAAATTGTATGCAATAGTGAGTTGAAATACCTGTTTGGCCAATGCACAAATGGAGATCATCTGGCTGGTCAGACTCAAAATGAACTCAAGATTGAGCTTACTGCCCTAGAAGAGCTTAGCCTTATTATGTTGCCAGAGATCATTAGCATTTGCCCTGAAGTTTGTTATCTAACATGGCCGTCGCTTCGTCAGTTTAGTTTGCAGAATTGTCCAGGCTTCTCCATTGTGTCAATCAATACTGGCTTGGCtttaaataacaatcacataattaatgaagCTTCACATCTAACAGTGCAGAATATAAAAGAAGTTCGGGTCAATAACTGTGAGTTAGAAGGTATCATTCAGCTGGCAGAACTATCCATTGATGGAAAACAAGATCCACTGACATCTTGTTTGGAAATGTTGTATTTAGAGAATCTGCCTCAACTGAGGTACATATGTAAAGGTGATATACAATCCAGTAACCTCCTCCAAAATCTTCAACAAATGGAGGTAAGTGGATGcagaaaattaaaatccatCTTTTCAGCCTGTATGTTAGGAGGCCTGCCTCAACTGAAAGAGCTGAAGATAGAAAATTGCAATCAGCTACAACAAATCATTGAGGATAAGGAGCGTCAAAACTCAGGATCATTCAATCTGTCCAGCCTTACAAGGCTAATGCTAAAATCATGTCCAATTTTGAGTTCATTGTTCACAACATCCAGTGCTGAAACCTTTACTCCATTGGAAGAATTGATGATAGAAGACTGCCATAGTTTGAAGCATATACTAATTTATGGAAGAGctcatacaaataaaaaagaagaaatgattCAAGATAATCATCACTTTCAGAGTTATGTGCCAGTGTTTCCAAGTTTGAAAAAGTTGAGTATTATGAGATGTAACTTATTGCAGTATATATTTCCCATCTCATTTGCCAGAGGCCTGAGGCAATTGGAAACCGTAGAAATTAGAGAAACTCCTGAGTTGAGACATGTATTTGGTCAAAATATTCATTCTTCCCATCAATACCAAAACAAGTTCCAAATTGAGTTTCCTGTATTGGAAAACGTTGCACTCCATAGTACACCAAATATAATCGGCATTTGTCCAGAAAACTATTCTGCAACATGCTCATCTTTACAACTGCTTGTCATGAACAATGTTGGGCTGTCCACTCTGTCTATCAATAATTTGACAGTTGATTTAGAAGCTACACATTCTGATCATAGTTCTAAAACGGATTCAAGGGCAACGAGTATGACAATTAAGCGAAAGTTAGTATCTGTTATTATTGAGAACAGCtccaaaatcaaagaaattttccATCTGGAGGGATTTCCTATGAATGGACAACAATTGACTTTGTGCTTAGAAGTCCTAAAGTTAGTCAATTTACCAGAGCTAAGGTATATATGGACAAGTTCCAAACATTTTGTGGGCCCTCAAGTTCAACAGCTTCATGAACTACACATTTGCAACTGTCCAAAACTAAAGGCTATCTTCTCTGCCTCTATCTTGAGAATGCTACCTCTGCTGAAAATCCTAGTGGTAGAACATTGTGAGGAATTGGAGCACATCATTGAGGatgataaagaaaatgaaaatggctCAAATTCTCAATCCCCAAAAGTATGCTTCCCACAGCTTAAATTCCTTCTTGTCACACACTGCAACAACTTGAAGCATCTGTTCTTTTTCTCCATTTCCCATGAGTTTCCAGAACTAGAGTATCTGATCCTAGATCAAAATTCTCAACTAGTGCAAGTGTTTGAAGGTGAAGCAGGTGAGGGAGTAAGGAGGGTGGAGCTTTTGCTTCCAAAACTGAAACATGTAGTATTAATGGAACAGCCAAACCTCATTAATTTCTGTCAAGGGATTGAGTTTCAGACTTTGATTAATCTTCTTGTGCACAATTGTCCAAAGTTCTCACTAACTTCAACGACTACTGTCGAGGACATGCTGCAAACCTCTAATTCTGataaggAAATTGATTTCTATCTACGTCCTCACTTACTCAACATAAGTGGTATCACAACAAAAGGCCATGATGTCCCTACATCACAGAAAGAAGACAAAGGGACACAAGACTTGCAATCATGGGACCAGAAACTGCCTCTCATTCCTTTACCAAACTTGAGAGAGaatattaaagaaacaaaaacaaccatTATTGGTAATGTTTCGGCATTAGCAATACCAACTTCTGCTTTAATACTTAGCAGGCGATCCCTAACTTCTTCAGCAACTCGTCTGTATAAAATACCTTCGGATAGTATTAAGGACATAGTGAAAGACAGCATTCAGGAGGAGGCTCCATCAGAGGAAGTTATGAAAGAAACTTTGTCAGCTGGTTTAGAAGGCGCTAGCTTGGATGGTGTTGTTGCAGCTCACACCAAATCTAGTGGTGCGGACATGGTACCAGATTCCCTGGTGATTGAACAAGGTGATAGACCGATTGAACACAGGAGAAGAACCTCACCATGTCAGAAGATCCAGAATGTTGATGATAGTATCCAAGAAAGATCTAACTTGGTTGATAAAGAAGGTGAAATAGGGGTTGTTTCAAATTACAGCATTGTGGTTCAGAGAAATGAAGAACCCAAGAAGGAGTTTGTTGCAAAAGTTTCCACTTCAGAGATACCAGCTATAGAAACTTCATTAAGTAACTTGGAACTGGTTGAAAGGCCATCTCCAAGTTATTTGGATGTTCCTCTATATAAAACACACTCAAATGGGTTGGTGGATGGACAATCGATGAGTGAATCATGTTTGACGAACCAACAAACACCACTTGGAGAAATAGCAAGTACCGTTGATTTTCCTAAGAGTGAAATTAGGCACAGCCAAACTGAGACATACACTGCTAAAGAAAGTGAAGGCCACCCTATAAATATTCTAGACTCTAAGGCCAATGATCTCATCAGTTTATTTCCACCCATGGAAGAAGATGGTGAAGGCCAAGTAATTGCATCTTCTATTTCTGCAGTCGCTGGCAATGAAGAGTGTCATTTCACCGAAGATATCCGAGTTGTAAAAGCCATTGCGGACCTTGAAATGTGTCTAAAGATGCCTCTGAAGGACATAGCTAGCTCTGAGACTATCAGCCTTCTTCTTTTGACTGCTCTTAACTTCTTGTCCAACCTTCCTTTAAAAGATGTAACTCTATCAGATGGACTTAAGGATATTATAGACTCTATGCACAAAGAGTTCCCAAGCATTCTATGTTCTTTCAAGCAAACCTTTGCCACCACTGACAAGTTGGCAGTGCTTGAAGCTCATTGGAACGAGGTAGCCGTTACTCTTGAATCCAAAATTTCTGAGGCAAAGAATTTTATGGATGAAGCTCAACAGAAGGAAGCGGTTTTGAAGGAACGAGTCATTAGGTTgaagaaggaaataaaagatTGTGAGGCTGACTTATCATCTCTtcaagaggaaaagaagaaatgcATTGAAGAAACTATAGGGTACGAAAAGGAGTTTGAAAATATGAGGAAAGACAAGTCTCAAATGGTAGAAGATCAAAGAAAAGTTCGGCAAGAATTACTTGAGGTCGGTTATAAATGGTCGGCTCTGTGTAGCAGATTTGAGCACAATCGCATTGTTGCTAGAAATCCCTCTTGa 6288 0.3841 MDYLYGFASSISRDLVCGAINQLRYPCCFNNFVQELAKEEDNLIATRDSVQNRVAHAKKQTRKTAEVGNKWLKDANTDASDVNQLLKEARTKKSCCFGHCPNWIWRYRLGKKLANRKRDLKKCIKEGRQYIEFEHIAMLPSGTHYFLSEKCLNFESRQPAYEQLMEALKDDEVTMIGLYGMGGCGKTTLAMEVRKKAEEEHLFEEVLFVPASSTVEVRRIQEKIASSMQYTFPENEEMERAQRLYMRLTQENKVLVILDDVWEKLDFGAIGIPSTEHHKGCKVLITTRSEEVCTLMDCQRKIHLPILTDEEAWSLFQTKALISEGTSETLKHLAREISDKCKGLPVAIAAVASSLKGKAEVVWRVALNRFTSSKPVNIGKGLQNPYTCLQLSYDNLDTEEAKSLFLLCSLFPEDSEIPIELLTRFAIGLGVVGEVGSYEEARNEVIAAKIKLINSCLLLGVDHKSVKMHDLVRYVARRIARDGNKMIECTLGKNVTLEHNSMRYLCCEKIPNELDCSSLEFLYLDTYLAVSDGIFKGMKMLKVLFLYNKGRYRRPLLGMSLKSLTNLRCLLLGNWELGDISFLGDVKKLESLTLHNCSFLELPDVVVTQLTNLRLLDLSECDMKRSPFEVIGRHPQLEELYFVDHRSKWDFYNEHTAEFFQKFRVPQVLQRYHIHLGIMFAGFQEEFPNRHRTLFLSYLDPSNAAVKDLAKMAEVLCLANIEGGAKNILPGIFQIEGGMAHLIELLIRDSEEIEWLVDTSQHLSEVGALFSNLHWLRIERMTHLAALYHGSLPPGGHFEKLEELCLSHCPKLTCLFTHAVAQNMVQLEKLEIISCPGLKHLVTDDDREEISTDGKRLLFPKLKRLHVRECDMLEYLIPITFAQGLVQLESLEIVCNSELKYLFGQCTNGDHLAGQTQNELKIELTALEELSLIMLPEIISICPEVCYLTWPSLRQFSLQNCPGFSIVSINTGLALNNNHIINEASHLTVQNIKEVRVNNCELEGIIQLAELSIDGKQDPLTSCLEMLYLENLPQLRYICKGDIQSSNLLQNLQQMEVSGCRKLKSIFSACMLGGLPQLKELKIENCNQLQQIIEDKERQNSGSFNLSSLTRLMLKSCPILSSLFTTSSAETFTPLEELMIEDCHSLKHILIYGRAHTNKKEEMIQDNHHFQSYVPVFPSLKKLSIMRCNLLQYIFPISFARGLRQLETVEIRETPELRHVFGQNIHSSHQYQNKFQIEFPVLENVALHSTPNIIGICPENYSATCSSLQLLVMNNVGLSTLSINNLTVDLEATHSDHSSKTDSRATSMTIKRKLVSVIIENSSKIKEIFHLEGFPMNGQQLTLCLEVLKLVNLPELRYIWTSSKHFVGPQVQQLHELHICNCPKLKAIFSASILRMLPLLKILVVEHCEELEHIIEDDKENENGSNSQSPKVCFPQLKFLLVTHCNNLKHLFFFSISHEFPELEYLILDQNSQLVQVFEGEAGEGVRRVELLLPKLKHVVLMEQPNLINFCQGIEFQTLINLLVHNCPKFSLTSTTTVEDMLQTSNSDKEIDFYLRPHLLNISGITTKGHDVPTSQKEDKGTQDLQSWDQKLPLIPLPNLRENIKETKTTIIGNVSALAIPTSALILSRRSLTSSATRLYKIPSDSIKDIVKDSIQEEAPSEEVMKETLSAGLEGASLDGVVAAHTKSSGADMVPDSLVIEQGDRPIEHRRRTSPCQKIQNVDDSIQERSNLVDKEGEIGVVSNYSIVVQRNEEPKKEFVAKVSTSEIPAIETSLSNLELVERPSPSYLDVPLYKTHSNGLVDGQSMSESCLTNQQTPLGEIASTVDFPKSEIRHSQTETYTAKESEGHPINILDSKANDLISLFPPMEEDGEGQVIASSISAVAGNEECHFTEDIRVVKAIADLEMCLKMPLKDIASSETISLLLLTALNFLSNLPLKDVTLSDGLKDIIDSMHKEFPSILCSFKQTFATTDKLAVLEAHWNEVAVTLESKISEAKNFMDEAQQKEAVLKERVIRLKKEIKDCEADLSSLQEEKKKCIEETIGYEKEFENMRKDKSQMVEDQRKVRQELLEVGYKWSALCSRFEHNRIVARNPS 2095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1789 2095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 408 IPR027417 -
Ssu8g1789 2095 SUPERFAMILY L domain-like 463 1189 - -
Ssu8g1789 2095 Coils Coil 33 53 - -
Ssu8g1789 2095 Gene3D Ribonuclease Inhibitor 1166 1546 IPR032675 -
Ssu8g1789 2095 Coils Coil 1079 1099 - -
Ssu8g1789 2095 Gene3D Ribonuclease Inhibitor 696 851 IPR032675 -
Ssu8g1789 2095 PRINTS Disease resistance protein signature 248 262 - -
Ssu8g1789 2095 PRINTS Disease resistance protein signature 341 355 - -
Ssu8g1789 2095 PRINTS Disease resistance protein signature 608 624 - -
Ssu8g1789 2095 PRINTS Disease resistance protein signature 175 190 - -
Ssu8g1789 2095 Gene3D - 307 392 IPR042197 -
Ssu8g1789 2095 Coils Coil 72 92 - -
Ssu8g1789 2095 SUPERFAMILY RNI-like 728 962 - -
Ssu8g1789 2095 Coils Coil 1986 2041 - -
Ssu8g1789 2095 PANTHER DISEASE RESISTANCE RPS5-LIKE PROTEIN 23 1100 - -
Ssu8g1789 2095 PANTHER DISEASE RESISTANCE RPS5-LIKE PROTEIN 1102 1426 - -
Ssu8g1789 2095 Gene3D - 393 479 IPR036388 -
Ssu8g1789 2095 PANTHER - 23 1100 - -
Ssu8g1789 2095 PANTHER - 1102 1426 - -
Ssu8g1789 2095 SUPERFAMILY RNI-like 1177 1543 - -
Ssu8g1789 2095 Pfam NB-ARC domain 161 395 IPR002182 GO:0043531
Ssu8g1789 2095 Gene3D Ribonuclease Inhibitor 481 679 IPR032675 -
Ssu8g1789 2095 Gene3D Ribonuclease Inhibitor 917 1165 IPR032675 -
Ssu8g1789 2095 Gene3D - 143 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1789 Ssu-Chr8 46028497 46036898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1789 172 621 WRKY Transcription Factor Family AT5G45050 23.228 8.97e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1789 - - ccaj:109806427 3279.57