Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1783 ATGAAGAATTGGAAACAACATAAGCGAGATAGGTCTCAGATGCAAAGAGAAGTTACTGAGGCATTTACTGAAGACGAATTAACAACACTTCAACTTCTTGAAATtatgaaacaagaaaaagatCCGTACAAGTGGCATGAAAATCTTTTTGCCAGCAAGAAATGCAAACAAGCCCAAGATTTTGTTGAATGGTCATCATCATTGGCAACAACAACGGAGGAAGATGACAAAAACGCTGAGACACTCGTTTCTTTGGTAACTACACACCAACAGGAGAAACGTAAATCGTTGATGGAAGGGTCATCATCAATGGTTCCCTCCAACATTCCCACACAAGAATATTTCTCTCATGGTAATGGATATAATAACCCTTCAGATTTGCCACCGCTCGAGAGCCTCAAAGACTATATTTTAGAGTGTGGTAAGCCTCTTGAAAAGCAATTGACAAATAGTGACGTGGAAGCAAATCTTAACAGGCTCATGCTCAATAAAAAGCACGTGGAAGAAATGTTCTTACCGCTATtgagaaatgatgaaaatattgaAGCGGGAATACAAGCATGTGCTTATGATATGCACGGCAATAATTACACTATAATGTTCAAGAAGTGGGCAAATAAGTACTACGTGCTTAACGGTGAGTGGAAAGATTTCTTCCAAATCCATGAATTGCAGAAAAACGATTTTATCACGGTGTGGATATTTCGTCATTCAATAAGCAATAGGTTATGCTTCGCTCTTGTATTCAGAAGATCGGAAGGGTGA 765 0.3739 MKNWKQHKRDRSQMQREVTEAFTEDELTTLQLLEIMKQEKDPYKWHENLFASKKCKQAQDFVEWSSSLATTTEEDDKNAETLVSLVTTHQQEKRKSLMEGSSSMVPSNIPTQEYFSHGNGYNNPSDLPPLESLKDYILECGKPLEKQLTNSDVEANLNRLMLNKKHVEEMFLPLLRNDENIEAGIQACAYDMHGNNYTIMFKKWANKYYVLNGEWKDFFQIHELQKNDFITVWIFRHSISNRLCFALVFRRSEG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1783 254 PANTHER B3 DOMAIN PLANT PROTEIN 44 251 - -
Ssu8g1783 254 Pfam B3 DNA binding domain 145 233 IPR003340 GO:0003677
Ssu8g1783 254 Coils Coil 150 170 - -
Ssu8g1783 254 SUPERFAMILY DNA-binding pseudobarrel domain 145 252 IPR015300 -
Ssu8g1783 254 CDD B3_DNA 146 250 IPR003340 GO:0003677
Ssu8g1783 254 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 44 251 IPR005508 GO:0003677
Ssu8g1783 254 ProSiteProfiles B3 DNA-binding domain profile. 191 253 IPR003340 GO:0003677
Ssu8g1783 254 Gene3D - 139 248 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1783 Ssu-Chr8 45611939 45612703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1783 141 247 B3 DNA Binding Superfamily AT4G03170 40.367 1.54e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu8g1783 B3 1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1783 - - gmx:121174747 243.817