Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1782 ATGCCATCCACTTGTCTACCCTCTGTCCAATTCTTCATGCACAAATCATCAGAAGTTTGGGCTACTAATACAATTCTCGTCTTGGGTATGACAGCCTTGGAAAGTACGAAGAATTGGAATCAACATAAGCGAAATAGGTCCCAGATTCCAAGAAAAGCTGTTGAGGCATTCAGCGAGGACGAAATAACAGCACTTCAAATTCTAGAAATtatgaaacaagaaaaagatCCCCATAAGTGGCATGAAAATCTTTTAGCCAACCGGAGATGCAAACAATCCCAAGAATTTGCTGAATGGCCACCATCACCAATACCAGCAATGGATGAAGATGACAAAGATGCTGAAACGCTCGTTTGTTTGGTAACTACACACCAAGAGGAGAATTGTGAGTCATTGATAGAAGGGTCATCATCAATGGTTGTTCCCTCCAACATTCCCACACAAGAATATTTCTCTTACGGTAATGGATATAACCCTTCAGATTTGCCACCGCTCGAGAGCCTCAAAGACTATATTTTAGAGTGTCGTAAGCCTCTTGAGAAACAATTGACAAATAGTGATGTGGAAGCAAATCTTAATAGGCTCATGCTCAATAAAAAGCACGTGGAAAAAACGTTCTTACCGCTATTGAGGAATGATGAAAATATTGAAGCAGGCATACAAGCTTGTGCCTATGATATTCATGGTAATAATTACACTATGATGTTCAAGAAGTGGGCAAATAAGTACTATGTGCTTAATGGTGAGTGGAAAGATTTTTTCCAAATCCATAAATTGCAAAAAAACGATTATGTCACAGTGTGGATATTTCGTCACTCAACAAGCAACAAGCTATCTTTCGCTCTTGTATATCAAAAGATCGGAAGGTGA 870 0.3862 MPSTCLPSVQFFMHKSSEVWATNTILVLGMTALESTKNWNQHKRNRSQIPRKAVEAFSEDEITALQILEIMKQEKDPHKWHENLLANRRCKQSQEFAEWPPSPIPAMDEDDKDAETLVCLVTTHQEENCESLIEGSSSMVVPSNIPTQEYFSYGNGYNPSDLPPLESLKDYILECRKPLEKQLTNSDVEANLNRLMLNKKHVEKTFLPLLRNDENIEAGIQACAYDIHGNNYTMMFKKWANKYYVLNGEWKDFFQIHKLQKNDYVTVWIFRHSTSNKLSFALVYQKIGR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1782 289 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 45 286 IPR005508 GO:0003677
Ssu8g1782 289 SUPERFAMILY DNA-binding pseudobarrel domain 180 274 IPR015300 -
Ssu8g1782 289 CDD B3_DNA 181 276 IPR003340 GO:0003677
Ssu8g1782 289 Pfam B3 DNA binding domain 180 269 IPR003340 GO:0003677
Ssu8g1782 289 Gene3D - 173 282 IPR015300 -
Ssu8g1782 289 ProSiteProfiles B3 DNA-binding domain profile. 226 286 IPR003340 GO:0003677
Ssu8g1782 289 PANTHER B3 DOMAIN PLANT PROTEIN 45 286 - -
Ssu8g1782 289 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1782 Ssu-Chr8 45606971 45610223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1782 177 288 B3 DNA Binding Superfamily AT4G03170 40.351 1.32e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu8g1782 B3 1.7e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1782 - - gmx:121174747 237.269