Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1780 ATGTATGGGAGAAAAGCTTGCCAACTTGTGAAAGAATTTGCAAGCGGAGAAAAGGGCCAGCTTGCGCCATTCAATAGTGACTTGTTTGGACAAGTAGTTGCAGAATGCAGTCAACATCACCTTGAGCTTCAGTCCTTGATAAGGAAGATACAGGAAGAAGGTTTGGATGTCCAAACGGCAAGAAATGCAGATCACTACGGAGCCCTTATCCACCATCTTGCTTTAGTCCGAAATAAACGTTGCCTAATGGCCTATGTGTATAATCGAGCAGAAATTATACGAAGCTTGTTATGGAAGATAGGGCATGTGCTTCCTCGAGAAATTGAAGAGAAGCTTTGTCATTCGGAGGAAGAATATTTCAAGAAGCATTCTACAGCATTGAAATCTTATATGTCGAAACAGCTGGTTGATTTGACTGTGGATATGGTACCGCCAAAAGACCCTTTCATCCAAGTAAGGGTCCTTGATGACATTGGAGAAGGCATTGTGCTTAGTGACGATAAGACTGCTAATTTTGCCCGCCATTCAATGCACTTTCTGAAGCGAACTGATGCGGAGCCATTTATCTCACAGGGCCTAATGGAGGAGCTCACGAGTTGA 600 0.435 MYGRKACQLVKEFASGEKGQLAPFNSDLFGQVVAECSQHHLELQSLIRKIQEEGLDVQTARNADHYGALIHHLALVRNKRCLMAYVYNRAEIIRSLLWKIGHVLPREIEEKLCHSEEEYFKKHSTALKSYMSKQLVDLTVDMVPPKDPFIQVRVLDDIGEGIVLSDDKTANFARHSMHFLKRTDAEPFISQGLMEELTS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1780 199 SUPERFAMILY GINS helical bundle-like 1 146 IPR036224 -
Ssu8g1780 199 Gene3D - 1 134 - -
Ssu8g1780 199 PANTHER PARTNER OF SLD5 1 195 IPR005339 GO:0000811|GO:0006260
Ssu8g1780 199 CDD GINS_A_psf1 3 133 IPR005339 GO:0000811|GO:0006260
Ssu8g1780 199 Pfam GINS complex protein 46 116 IPR021151 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1780 1 199 Core DNA Replication Machinery Family AT1G80190 71.782 2.19e-107 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1780 K10732 - qsu:112021696 342.428