Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1775 atggCCACACGTGAGATGGCCAACTTCATAAGGGGAGTAAAGCATGACAATGGTCCTAACCTGTTGGACAAGTTGAAGATAACATTGAGATCAATTGATGCTTTGGTCAACCATGCTGAAGAGAGGCAGACTGCAGATTTGCACATAAGGGAATGGCTGAATGATCTCAAGGATGTCATGTTCAAGGCAGAAGACCTTTTAGATAAGATCAGTGTATTAGCTTCAAGCCACAAACTGGAAGCTGATTCATGGAGTAGTGGCATAAGCAAGGTATGTTGCTTTTCACCTACTTCACTTGGTGGTTTTAGTGAAAGGATGGAGAGcattatagaaaaatttgaaaaccttGCGAAACAAAAAGATGTTTTGGGCTTAAGGGAAGGTGTCAATgagaaaacatttaaaaattttcaaacaacttCCTTAGCCAGAAAATCTTCTATCTATGGAAGAAATGCTGATAAGGATaatgttatcaaaattttgctATCAGTATTAGATGATGGTAGTGATAGGATATGTGTCATCCCCATAGTTGGTCTGGGGGGAGTTGGGAAGACTACTCTTGCTCAACATGTGTACAATGATGACCAAGTAAAGCAGCATTTCGACATCAAAGCATGGGTTTGTGTTAACCAGGAGTTTGATGTCTTCAAATTGACCAAGACCACTCTAGAGGCAATCCCTTTAACATGTGATACAATGGATCTCAATCTGctacaaattaaattgaaagagtTCCTTCACAGCAAgagatttttaattgttttagatGATGTGTGGAACAAAAGCTATATTATGTGGGAAATTTTAAGGCGTCCATTTGAATTCGGTGCTCCAGGAAGTTGTGTCCTTGTAACAACCCGCAATGAAAATGTTGCATCAGCTATGCTTATAGTTCCAAGTTACCATTTAAAACCACTAGAAGATGATGATTGTTGGTTGCTGTTCTCTGAGCATGCATTTGAGGGGGGAAGATTCATAAAAAGTGCTGCACTTGATGATATTGGCAGGAAGATAGTGAAGAAATGTAGGGGGCTGCCACTGGCAGCAAAAGCTCTTGGCGGTCTCTTGCGGTCCAAAGTAGATTCAAGAGAATGGATGAAGGTTCTGGAAAGTAAAATATGGGACTTTCCAAATGATAGGAGCAATATTCTTCCAGCTCTTATGTTGAGCTACTACTATCTTCCCTCCACTCTCAAGCGTTGTTTTGCTTATTGCTCCATATTTCCCAAAAGTTACCAATTTTGGCGAAAGGAATTAGTGCGCCTGTGGATGGCGGAAGATCTGCTGCCACATCCCAAAGGAAATGAAAATGTGGAAGAACTTGGTACTGAATACTTCGATGATCTAACATCCAGATCATTCTTTATCAAATCAAGTAGGAAACGCTTTGTCATGCATGATCTCGTGGTTGATTTAGCTGAATTTGTTTCTGGAGGGTTCTCATTCAGATTGGAGGGACAGAAGAATAATTACCTATCAGCAAGAACTCGTCATTTGTCACATTCAAAGCTTCAGCTTGAtgatttggagaaaaaaattgctACATGTGAAAATCTACGAACTTTTCTTCCATCACAAGTTTTGTCATGGCCAAGATGTTGA 1608 0.3762 MATREMANFIRGVKHDNGPNLLDKLKITLRSIDALVNHAEERQTADLHIREWLNDLKDVMFKAEDLLDKISVLASSHKLEADSWSSGISKVCCFSPTSLGGFSERMESIIEKFENLAKQKDVLGLREGVNEKTFKNFQTTSLARKSSIYGRNADKDNVIKILLSVLDDGSDRICVIPIVGLGGVGKTTLAQHVYNDDQVKQHFDIKAWVCVNQEFDVFKLTKTTLEAIPLTCDTMDLNLLQIKLKEFLHSKRFLIVLDDVWNKSYIMWEILRRPFEFGAPGSCVLVTTRNENVASAMLIVPSYHLKPLEDDDCWLLFSEHAFEGGRFIKSAALDDIGRKIVKKCRGLPLAAKALGGLLRSKVDSREWMKVLESKIWDFPNDRSNILPALMLSYYYLPSTLKRCFAYCSIFPKSYQFWRKELVRLWMAEDLLPHPKGNENVEELGTEYFDDLTSRSFFIKSSRKRFVMHDLVVDLAEFVSGGFSFRLEGQKNNYLSARTRHLSHSKLQLDDLEKKIATCENLRTFLPSQVLSWPRC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1775 535 Gene3D - 392 477 IPR036388 -
Ssu8g1775 535 PRINTS Disease resistance protein signature 247 261 - -
Ssu8g1775 535 PRINTS Disease resistance protein signature 175 190 - -
Ssu8g1775 535 PRINTS Disease resistance protein signature 344 358 - -
Ssu8g1775 535 PANTHER OS05G0414200 PROTEIN 18 526 - -
Ssu8g1775 535 PANTHER DISEASE RESISTANCE PROTEIN RP 36 507 IPR044974 GO:0006952
Ssu8g1775 535 Pfam NB-ARC domain 154 372 IPR002182 GO:0043531
Ssu8g1775 535 Gene3D - 129 299 IPR027417 -
Ssu8g1775 535 Coils Coil 501 521 - -
Ssu8g1775 535 CDD AAA 153 260 - -
Ssu8g1775 535 PANTHER - 36 507 - -
Ssu8g1775 535 PANTHER DISEASE RESISTANCE PROTEIN RP 18 526 IPR044974 GO:0006952
Ssu8g1775 535 Coils Coil 22 42 - -
Ssu8g1775 535 Gene3D - 307 391 IPR042197 -
Ssu8g1775 535 Gene3D - 1 119 - -
Ssu8g1775 535 Pfam Rx N-terminal domain 6 82 IPR041118 -
Ssu8g1775 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 407 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1775 Ssu-Chr8 45245086 45246693 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1775 173 361 WRKY Transcription Factor Family AT5G45050 28.718 2.43e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1775 - - lja:Lj0g3v0087809.1 848.58