Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1768 ATGCAAACCTTTTTACCTATCTACCAACTGAGATCTCTAGCTAGTGAAGACTGCCGGTCTTTACTTGCTACACATGCATTTGGAGCAAATAATTGTAGCGAACAATCCAGCCTAGAAGTAATTGGTAaagaaattgcaaaaaaatgtGATGGCTTACCATTAGCTGCAGTAGCACTTGGGGGTCTTCTTCACAccaatttatcatataattattggAACAAGGTATTAAGAAGTAACATTTGGGATTTGCCAAATGTTAAGGTGCTACCAGCTCTACTATTGAGCTATCATTATCTTCCTGCTCCTTTAAAACGATGCTGCGCATACCTATCGATATTTCCAAAGAACTCCAAGTTAGAAAAAGAGATAGTAGTTCGGCTATGGATTGCAGAAGGTTTAGTATGTCAGTCCAAAAGTGGCAAAACTACGGAAAAAGTAGGAATGAGACAGCTAAGGGTGTTGTCCTTGTCACACTATGTGAATTTCACTGAGTTGCCTGATTGTCTTGGAAGTTTAATTTACCTGCGATACTTAGATCTTTCTAACACTAGAATTCGGAGATTGCCAGATATAACATGCAAGCTCTACAATATGCAGACCTTCTTGTTGTCCGACTGTTGGTCACTCACTAAATTGCCTGAGGACATTGGAAATTTGGTTAATCCAAGACATCTAGACATCAGtgggactaaattgaaaaagatgCCTGCACAGATAGCCACACTACAAAATCTTCAAACCTTGTCCacctttgtcattagcaaactGCAGGATGGCTTGAAGGTTGGGGAGCTGAAAAACTTTCCCCATCTACGAGGGAAACTTTCCATTTTAAAGCTACAAAATGTTATTGACCCCTCTGAAGCTGTCCAAGCCaatttgaagaagaaagaacaaatagatGACTTAGCATTAGAATGGGATTGTGGTACCACTGAAGACACACAAATTGAAAGGCTTGTACTTAAACAGCTGCAGCCTCCAATAAATTTGAAGAAACTGACCATCAAATTCTATGGTGGATCCAGCTTTCCAAATTGGTTGGGTGATTCTTCATTTGGTAACATGGTGCACTTATGCGTGGCTGTCATCATTGTTGGTCACTGCCTCCCCTTGGACGATTAG 1125 0.3742 MQTFLPIYQLRSLASEDCRSLLATHAFGANNCSEQSSLEVIGKEIAKKCDGLPLAAVALGGLLHTNLSYNYWNKVLRSNIWDLPNVKVLPALLLSYHYLPAPLKRCCAYLSIFPKNSKLEKEIVVRLWIAEGLVCQSKSGKTTEKVGMRQLRVLSLSHYVNFTELPDCLGSLIYLRYLDLSNTRIRRLPDITCKLYNMQTFLLSDCWSLTKLPEDIGNLVNPRHLDISGTKLKKMPAQIATLQNLQTLSTFVISKLQDGLKVGELKNFPHLRGKLSILKLQNVIDPSEAVQANLKKKEQIDDLALEWDCGTTEDTQIERLVLKQLQPPINLKKLTIKFYGGSSFPNWLGDSSFGNMVHLCVAVIIVGHCLPLDD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1768 374 PANTHER - 12 147 - -
Ssu8g1768 374 Pfam NB-ARC domain 8 76 IPR002182 GO:0043531
Ssu8g1768 374 PANTHER - 147 362 - -
Ssu8g1768 374 Gene3D Ribonuclease Inhibitor 136 364 IPR032675 -
Ssu8g1768 374 PANTHER DISEASE RESISTANCE PROTEIN RP 147 362 IPR044974 GO:0006952
Ssu8g1768 374 PANTHER DISEASE RESISTANCE PROTEIN RP 12 147 IPR044974 GO:0006952
Ssu8g1768 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 110 IPR027417 -
Ssu8g1768 374 ProSiteProfiles Leucine-rich repeat profile. 174 195 IPR001611 GO:0005515
Ssu8g1768 374 Gene3D - 12 99 IPR042197 -
Ssu8g1768 374 SUPERFAMILY L domain-like 132 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1768 Ssu-Chr8 45163907 45165379 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1768 164 255 WRKY Transcription Factor Family AT4G12020 36.559 5.42e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1768 - - vun:114184488 362.844