Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1767 atgaaaatccCGTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGACGAGCGAGTTCCGCTTCTGCTCCAATGCGGGCACGGCTTCTGCAGAGAGTGTCTCTCTAGAATGTTCTCGGCCTCTTCGGACACCACGCTGGCGTGCCCGAGGTGCCGCCACGTGTCCGCCGTGGGGAACTCCGTGCAGGCGCTGCGCAAGAACTACGCGGTGCTCGCGCTCCTAAACTCCGCCGCCGCCGCGAACGGTGCTTCCGGCGGCGGAGGGTCGAATTTCGACTGCGACTACACCGACGACGAGGAGGAGGAGGGACGGCGGAGATGA 321 0.6262 MKIPCCSVCQTRYNEDERVPLLLQCGHGFCRECLSRMFSASSDTTLACPRCRHVSAVGNSVQALRKNYAVLALLNSAAAANGASGGGGSNFDCDYTDDEEEEGRRR 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1767 106 SUPERFAMILY RING/U-box 5 57 - -
Ssu8g1767 106 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Ssu8g1767 106 SMART ring_2 6 51 IPR001841 -
Ssu8g1767 106 Pfam RING-type zinc-finger 6 49 IPR027370 -
Ssu8g1767 106 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 8 101 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Ssu8g1767 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Ssu8g1767 106 MobiDBLite consensus disorder prediction 79 106 - -
Ssu8g1767 106 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1767 Ssu-Chr8 45121273 45121593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1767 6 84 C3H Transcription Factor Family AT5G17600 31.250 2.61e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1767 K16279 - gmx:100782956 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1767 8 45121273 45121593 Ssu8g1767 8 45121273 45121593 ECH