Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1766 ATGTGGATGGCGGTGATCAGCGGCGGCGGTGGCGGGGAGGGAGGGCGGCGGTGCCGGCACAACGTGGCGGTGAAGAAGGTGGCGGTGGGGGAGGGAATGGATTTGGATTGGGTGCAGGGGAAGTTAGAGGATTTGCGTAAGGCTTCGATGTGGTGCAGGAACGTGTGCACTTTCCATGGGACAATGAGGTTGGAGGAGAGTTTGTGCCTCGTGATGGATAAGTGTTATGGATCGGTTCAGTCCGAGATGCAGCGCAATGAGGGGAGGCTCACTTTGGAGCAAGTCCTAAGATATGGGGCAGACATTGCACGAGGGGTTGTTGAGCTTCATGCTGCAGGCGTTGTTTGCATGAATTTAAAACCTTCCAATCTTCTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCAGAGTGTGACTCCACGAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTgaagaaatcattaaatttgttttgggACGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTGCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATATATCGAGCAGTTGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGTGTGGTTGGTGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAACCATCTAAAAGGCCTACTTTTAGTGCAATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGACATAGATAAGGGCTCTGTATCAAATGTGATGGAGCCTTCCCCAGTACCTGAATTGGAGGTTCCTCAGGAAAACCCAAACCATCTTCATCGACTTGTGTCTGAAGGAGATACTGCAGGTGTTAGAGATCTTCTTGCAAAGGCTGCATCAGAAAATGGCAGCAACTACCTATCTTCACTATTGGAAGCTCAAAATGCTGATGGGCAAACGGCTCTCCACTTAGCTTGTAGACGTGGTAGTGCAGAACTTGTTGAGACGATTCTGGAGTATAGAGAGGCAAATGTTGATATATTGGACAAAGATGGAGATCCTCCCCTTGTTTTTGCATTAGCAGCTGGTTCCCCAGAATGTGTTCGTAGCCTTATCAAAAGAAATGCTAATGTGCGGTCACAATTGAGAGATGGTTTTGGCCCATCAGTAGCTCATGTTTGTGCCTATCATGGCCAACCAGATTGTATGCGAGAATTACTATTAGCTGGAGCTGATCCTAACGCAATGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAGAATGGAGGCTGTAGATCAATGGCCATCTTGAATTCAAAGAACCTGACACCACTGCATTTGTGTGTGGCAACATGGAATGTTGCCGTTGTGAAGAGATGGGTGGAAGTTGCAACATCTGATGAGATTGCTGAAGCTATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAATGAGGGGAGAGAACTGGTGCGGATATTGCTTGCAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTGTGACTAACGACGTGGACTTGGTTAAGGTTATTCTAGCTGCTGGGGTTAATGTGAACATTCGCAATGTGCGCAACATCATACCTCTTCACTTGGCCCTAGCTAGGGGTGCAAAGGCATGTGTTGGACTACTTCTAGCTGCTGGAGCAGATTATAATTTGCAGGATGACGATGGTGAAAATGCTTTCCATATAGCAGCAGAGACAGCAAAAATGATTCGTGAAAATCTTGACTGGCTTATAGTTATGCTAATGAAGCCTGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACACTACGTGACATTTTAGAGGCTCTCCCCCGAGAATGGTTATCCGAAGATCTGATGGAAGCACTCATGAATAGGGGAGTTCATTTGTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTCAAAAGATCTGTCGTAACTCCAACACATGGATGGCAAGGTACTAAACCAAAGGGTGTTGGTTTTGTGCAAAGTGTTCCAGACAGAGATAATCTCATCGTTTCATTTTGTTCTGGAGAGGTTCATGTTCTGGCAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAGCATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGTGGGCAGTCACGTGACAGCATCGGGACAGTATTATGTGTTGACGATGACGGAATTCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCGGCAGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAGCATGGACTGGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCAGACAGTAGTCTATTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGTGATCGGGTATGTGTGAAACGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATAATAGTGTCGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGATATACCAAATCGACCCATACCATGGCAAGCTGATCCATCGGATATGGAGAAGGTGGAAGATTTTAAGATTGGAGATTGGGCAAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGATGATATTACAAGGAATTGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGTGATATGGGTGTTGCTTTTTGCTTCAGAAGTAAGCCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCCCCATTTGAGGTGGGACAAGAAATTCATATGATGCCATCTGTTACTCAGCCACGGCTTGGGTGGTCAAATGAATCACCGGCAACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGACTTCCAGGATTTGAAGTTGGGGATTGGGTACGCTCAAAACCAAGTCTGGGAAACAGACCAAGTTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCGTGCTGTTTTCGCAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGTTGAACCGAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGGGTTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTCGCATTTTTTGGTCTGCCAGTACTGTGGAGAGGAGATCCTTCAGACCTTGAGATTGAACAAATTTTTGAAGTGGGAGAGTGGGTGAAGTTGAAAGATAATGCAAATGATTGGAAATCAATTGGGCCAGGTAGTGTTGGTGTCGTTCAAGGAATAGGGTATGAAGGAGACAAATTGGACAGAAGCATTTTAGTTGGATTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTAAAACAATATGTAAAACAACCAAGATTTGGATGGTCAGGGCATACCCATGCTAGTATTGGGACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCAGGATCCAAAGCATGGATGTTGGACCCATCAGAAGTGGAAGTGGTAGAAGAGAAGGAGCTCTGCATTGGAGACTGGGTAAGGGTTAAGGCGTCAGTTTCAACCCCAACCCACCACTGGGGGGAAGTGAGTCATTCAAGCATTGGTGTGGTGCATCGGATGGAAGATGAGGATCTGTGGGTGGCGTTCTGTTTTGTGGAGAGGCTATGGCTTTGTAAAGCATGGGAAATGGAACGGGTAAGGCCATTTAACGTGGGGGACAAGGTAAGGATCAGAGATGGACTGGTGACCCCACGATGGGGATGGGGAATGGAGACACATGCCAGCAAGGGACAGGTTGTAGGGGTAGATGCAAATGGAAAACTAAGAGTAAAATTCCGGTGGAGGGAAGGGAGGCCTTGGATAGGAGACCCTGCTGATCTTGCCCTTGATGAGGACTGA 4428 0.4587 MWMAVISGGGGGEGGRRCRHNVAVKKVAVGEGMDLDWVQGKLEDLRKASMWCRNVCTFHGTMRLEESLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNDIDKGSVSNVMEPSPVPELEVPQENPNHLHRLVSEGDTAGVRDLLAKAASENGSNYLSSLLEAQNADGQTALHLACRRGSAELVETILEYREANVDILDKDGDPPLVFALAAGSPECVRSLIKRNANVRSQLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAMDDEGESVLHRAIAKKYTDCALVILENGGCRSMAILNSKNLTPLHLCVATWNVAVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHENEGRELVRILLAAGADPSAQDSQNGRTALHTAAVTNDVDLVKVILAAGVNVNIRNVRNIIPLHLALARGAKACVGLLLAAGADYNLQDDDGENAFHIAAETAKMIRENLDWLIVMLMKPDADIEVRNHSGKTLRDILEALPREWLSEDLMEALMNRGVHLSPTIFEVGDWVKFKRSVVTPTHGWQGTKPKGVGFVQSVPDRDNLIVSFCSGEVHVLANEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHNSVGRISEIENDGLLIIDIPNRPIPWQADPSDMEKVEDFKIGDWARVKASVSSPKYGWDDITRNCIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHMMPSVTQPRLGWSNESPATVGKIVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRTGLVEPRWGWRGAQPESQGVITSIHADGEVRVAFFGLPVLWRGDPSDLEIEQIFEVGEWVKLKDNANDWKSIGPGSVGVVQGIGYEGDKLDRSILVGFCGEQEKWVGPSSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKAWMLDPSEVEVVEEKELCIGDWVRVKASVSTPTHHWGEVSHSSIGVVHRMEDEDLWVAFCFVERLWLCKAWEMERVRPFNVGDKVRIRDGLVTPRWGWGMETHASKGQVVGVDANGKLRVKFRWREGRPWIGDPADLALDED 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1766 1475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 16 1474 - -
Ssu8g1766 1475 SUPERFAMILY Protein kinase-like (PK-like) 20 314 IPR011009 -
Ssu8g1766 1475 Pfam Ankyrin repeats (3 copies) 437 514 IPR002110 GO:0005515
Ssu8g1766 1475 Pfam Ankyrin repeats (3 copies) 342 424 IPR002110 GO:0005515
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat profile. 431 463 IPR002110 GO:0005515
Ssu8g1766 1475 Gene3D Transferase(Phosphotransferase) domain 1 75 303 - -
Ssu8g1766 1475 SMART ANK_2a 499 530 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 396 425 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 362 392 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 643 678 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 431 460 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 577 606 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 464 495 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 537 572 IPR002110 GO:0005515
Ssu8g1766 1475 SMART ANK_2a 610 639 IPR002110 GO:0005515
Ssu8g1766 1475 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1766 1475 Pfam Mind bomb SH3 repeat domain 968 1086 IPR040847 -
Ssu8g1766 1475 Pfam Mind bomb SH3 repeat domain 718 836 IPR040847 -
Ssu8g1766 1475 Pfam Mind bomb SH3 repeat domain 1221 1342 IPR040847 -
Ssu8g1766 1475 Pfam Mind bomb SH3 repeat domain 842 962 IPR040847 -
Ssu8g1766 1475 Pfam Mind bomb SH3 repeat domain 1094 1215 IPR040847 -
Ssu8g1766 1475 Pfam Mind bomb SH3 repeat domain 1351 1470 IPR040847 -
Ssu8g1766 1475 SUPERFAMILY Ankyrin repeat 357 683 IPR036770 -
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat region circular profile. 362 384 - -
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat profile. 396 428 IPR002110 GO:0005515
Ssu8g1766 1475 Gene3D - 304 491 IPR036770 -
Ssu8g1766 1475 ProSiteProfiles Protein kinase domain profile. 1 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1766 1475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 16 1474 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Ssu8g1766 1475 Gene3D - 619 696 IPR036770 -
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat profile. 362 395 IPR002110 GO:0005515
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat profile. 610 642 IPR002110 GO:0005515
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat profile. 577 609 IPR002110 GO:0005515
Ssu8g1766 1475 PRINTS Ankyrin repeat signature 363 378 IPR002110 GO:0005515
Ssu8g1766 1475 PRINTS Ankyrin repeat signature 559 573 IPR002110 GO:0005515
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat region circular profile. 610 642 - -
Ssu8g1766 1475 Gene3D - 492 618 IPR036770 -
Ssu8g1766 1475 Pfam Ankyrin repeats (many copies) 578 631 IPR002110 GO:0005515
Ssu8g1766 1475 ProSiteProfiles Ankyrin repeat region circular profile. 577 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1766 Ssu-Chr8 45105136 45121124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1766 9 310 MAP Kinase Kinase Kinase AT1G53570 24.679 8.06e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Ssu8g1766 Pkinase 1.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1766 K16279 - gmx:100777576 2905.16