Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1762 ATGGAGGATAAATCAGAGAAGCAAGATGATAACCACCCATCTCTCCTCCCTAATCACAACACCATCGAGGAAGAGTCTCCAAGGAAACCCACtggtggtggcagtgatagGCTGAAGAGAGATGAGTGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAATATGTCTCATCAAGAGCAAGCTCTACCAAATCACCAAAGACACAGACACAGTGCAAGAACAAGATAGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCAACCACTGCAGATGCATCATCTTGGCCTTTGTATTCTCGCCTTGATGTTCTGCTGCGTGGGACAGGACCAATATCTTCACTGCCACCACCAATAGCACAATCTCAATCACCACATGGTATCAATAACCAGGCTTTGGTGTTGTTGGAGCCACCTTCACTGGCAGTGTCACAAGCACCTCATcagccacctccaccacctctTGCTCCTCCACCACCTGCAATTGCACAAAACTCACACGGGTCCAATGGTGTTGAAAGACTAGCCAAGGAAGATGGTTTAGGAGCCAAGTCATCTGACCGTGTATCTAACAAGAATCCAATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGACAAGGTGAGACGCAATAAGAGGAAGATGAAAACTGAGAACAACAAGCGGAGAAGGAATAATAATGAAGACATGGAAATAGCAGAGAGCATAAGGTGGCTAGCGGAAGTGGTGGTAAGGTCAGAGCAAACAAGAATGGACACaatgaaagagatagagaggATGAGAGTTGAAGCTGAGGCCAAGCGAGGGGAAATGGAGCTTAAGCGAACTGAAATCATTGCCAACACACAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCATCACTAAGAATTGGAAGAAGTTAA 999 0.4324 MEDKSEKQDDNHPSLLPNHNTIEEESPRKPTGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKYVSSRASSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDVLLRGTGPISSLPPPIAQSQSPHGINNQALVLLEPPSLAVSQAPHQPPPPPLAPPPPAIAQNSHGSNGVERLAKEDGLGAKSSDRVSNKNPMDSDSSTPALYSEKDKVRRNKRKMKTENNKRRRNNNEDMEIAESIRWLAEVVVRSEQTRMDTMKEIERMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1762 332 Pfam Myb/SANT-like DNA-binding domain 40 127 IPR044822 -
Ssu8g1762 332 Coils Coil 280 300 - -
Ssu8g1762 332 MobiDBLite consensus disorder prediction 165 254 - -
Ssu8g1762 332 MobiDBLite consensus disorder prediction 209 225 - -
Ssu8g1762 332 MobiDBLite consensus disorder prediction 1 42 - -
Ssu8g1762 332 MobiDBLite consensus disorder prediction 167 184 - -
Ssu8g1762 332 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 26 328 IPR044823 -
Ssu8g1762 332 MobiDBLite consensus disorder prediction 22 42 - -
Ssu8g1762 332 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 26 328 - -
Ssu8g1762 332 Gene3D - 43 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1762 Ssu-Chr8 44955503 44957366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1762 29 135 Trihelix Transcription Factor Family AT3G14180 39.091 5.88e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu8g1762 Myb_DNA-bind_4 1.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1762 - - gmx:100799917 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1762 8 44955503 44957366 Ssu8g1762 8 44955503 44957366 ECH