Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1761 ATGGACACCAAGCTTCTAACCATCCGCACCCTCGTCTCCGCCCTCAGTTCCTCCTCCGACCAAACCCGCCTCGCCGCCCTCCGCCACCTCCGCCGCACCTCCAACGAAGACCCCGCCGCCCGGCCCCTCATCGCCGGCGCCGGCGCCGTCCCCGTCCTCGCCGCCGCCCTCTACTCCCCCTCCCACCCCATCCAAGAACACGCCGCCGCCACCCTCCTCAACCTGTCCATCACCGACCGCCGCCCCCTGGCCTCCTCCCCCGCCCTCCTCGACGCCCTCGCCCACCTCCTCTCCCGCCACgcctcctcctccgccgccgcgGCCGCCGTCCAGGCCGCCGCCGCCACCCTCTACAGCCTCCTCACCGTCGTCGCCGAGTTCCGCACCGTCGTCGGGGCGAAAACCGACATCCTCCGCGCCCTCGTCGGCATAATCAGTCATCCTGACTCGTCGACGGGGTCCGTGAAGGACGCCCTCAAAGCGTCCTTCGGCGTGGCGCTCCACCCGCCGAGCCGGATCACGTTGATCCGGCTCGGCGCGGTCCCCGCGCTCTTCGCCCTGGTGGCGAAGGGCAAGGACGGGAAGAGGAGGGTTGGCATAATTGAGGATGCCACTGCGGTGATCGCGCAGGTTGCGGGGTGCGAGGACAGCGAGGAGGCGTTTCGGAAGGTTTCCGGAATTTCCACGTTGGCGATGATGTTGTGTTCGGAGAGTGGGAGCTGTAGTTTGAGGACGAAGGAGAATGCGGTGGCGGCGTTGTTGAATTTGGTGAGGTGTGGGAGCGAGAGAGTTGTTGGGGAGGTTAGAGAAAAAGTTGGGGCTATGGATGGGATCGCGTACGTGCAGGAACACGGTAGCGCCAAAGGGAAGAGCAAAGCCGTGGCGTTTTTGAAGCTTTTGCTTGATGATGGAAGCAATGGTCAAATTGTTGAAGATTTGTATCCCGTTGAATCGGACACGGCTTCAAGTTCTAGTTGGAGTGGGTAA 987 0.6241 MDTKLLTIRTLVSALSSSSDQTRLAALRHLRRTSNEDPAARPLIAGAGAVPVLAAALYSPSHPIQEHAAATLLNLSITDRRPLASSPALLDALAHLLSRHASSSAAAAAVQAAAATLYSLLTVVAEFRTVVGAKTDILRALVGIISHPDSSTGSVKDALKASFGVALHPPSRITLIRLGAVPALFALVAKGKDGKRRVGIIEDATAVIAQVAGCEDSEEAFRKVSGISTLAMMLCSESGSCSLRTKENAVAALLNLVRCGSERVVGEVREKVGAMDGIAYVQEHGSAKGKSKAVAFLKLLLDDGSNGQIVEDLYPVESDTASSSSWSG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1761 328 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 306 - -
Ssu8g1761 328 PANTHER U BOX DOMAIN-CONTAINING 2 306 - -
Ssu8g1761 328 Gene3D - 5 307 IPR011989 -
Ssu8g1761 328 SUPERFAMILY ARM repeat 7 308 IPR016024 -
Ssu8g1761 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 76 IPR000225 GO:0005515
Ssu8g1761 328 Pfam Armadillo/beta-catenin-like repeat 39 76 IPR000225 GO:0005515
Ssu8g1761 328 SMART arm_5 37 77 IPR000225 GO:0005515
Ssu8g1761 328 SMART arm_5 168 213 IPR000225 GO:0005515
Ssu8g1761 328 SMART arm_5 214 258 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1761 Ssu-Chr8 44840719 44841705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1761 8 300 U-box Gene Family AT5G67340 31.864 2.68e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1761 - - gmx:100803111 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1761 8 44840719 44841705 Ssu8g1761 8 44840719 44841705 ECH