Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1760 ATGGGTGTGTTTTTCAAagGGAACCGACTTGTTTTGATATACATGTGGCTGTGGTGGAGTACTTGTATTCGCATTAGATTAGCAAATGACAGTTTGCATCAAGGTGATACACTGAACCAGACAACAACGCTATATTCCAAAAATGGCAAATATCGTTTGAGTTTTTCCGAAACAAATCCCAACAACCTGGCCAACTTGGTTATACGTGCGGTCCAGTATGATTTCCTAGTGTGGATTGCAAATAGAAACCAACCTGTTGACATTGAGTCTGCAGTTCTATCACTGAACCACTCTGGCGTGCTGAAAATAGAATCCCAACATGTGAAACCAATAATCCTTTACACTCCACCTCAAACTACCAATAACACTGGTTGTGTCAGAGATCTCACGTTAACTAATAATATGAACAAGATAATGTTTATAAGTGAGAGACAATCCTTACTTCATGCGTCAGCTTTTGAAGTTGACTTGAgttcaaattcaaaatgtaGGAACACTGTGGCCACATTATTGGACACTGGCAACTTTGTGCTTCAACAACTTCACCCCAACGGGAATAAGATTCTTTTGTGGCAGAGTTTTGATTACCCTACTGATGTTTTGATTCCTGGGATGAAATTAGGTGTTAATCACAGAACAGGTCATAAGTGGTCACTTACTTCGCGCTTGACTAGTTCACTCCGAACATCTGGTGCATTTAAGCTTGAATGGGAACCCATAGAAGGCGAGTTAATCATTAAAAGACACGAGAGAGTGTATTGGCAAAGTGGGAAATTGAGAAACAATAGGTTTGAGCACATTTCAAAGAAAGCTCAACGGTTTTATCAATACACCATTTTGTCTAATGGGGATGAGAACTCCTTGACGTTCACAACTTTGAATGGCAAGTTTACACGTTGGACGTTATTGGAAACTGGGCAATTAAGCAGTAACGAAGGAGATATTGCAAGGGCTGATGTGTGTTATGGATATAACACTGATGGGGGGTGTCAAAGATGGGAAGATATACGCAAAAGCAAATGTAGGGATCCAGGTGATGTATTTGAAAAAACGATGGGTAACCCCAATCATGATAATGTGATCACTGAACCGAATGTGAGTTATGGCTGCAGTGATTGCAAGGCTAGTTGTTGGACCAACTGTAACTGCACCGGATTCAAAAGATTTTATCGCAATGGAACAGgatgtatattttttctaaGGAATATTTCTATCAAAGATGTTGCTGTTGATAGCAGTGATGACAGTTTTTACATGTTGGTAAAGAAAAACCGGCACAATGGTACAAGAAAGTGGATATGGAGAAGTGTTGTAATTGCAACTGCTCTACTCATAATTTGCGCATTCATTCTATTCATAGCCATACAGAAACGAAAATCTATGCTTAAAGagaaggaaaaaagagaaacagaGATTGGGATGCTAAATTTAGCTACTTCCAATGAATCTTCCAGTATTAAAGATCTTGAAAAGGAATTAAGTAAGGAACatgatttaaagatatttagttATACATCAGTTGTGGTGGCAACAAATGACTTTTCTTCTGAAAACAAGTTAGGAGAAGGAGGCTTTGGACCCGTTTACAAGGGAATCCTACCAACAGGGGAAGAAGTTGCTATAAAAAGACTTTCAAAAAGATCTGGACAAGGAATTGTTGAATTTAGAAATGAATTAACGCTCATATGCGAACTTCAACACATGAACCttgttaaattaattggttGTTGCATTGATGAAGAAGAGAGGATTCTAATGTACGAGTATATGCCAAACAAAAGCTTGGATTTCTATATATTTGATTCTGCTAGAAAAATGTTACTAGATTGGAAGAAGCGCTTCAATATAATAGAAGGAATTTCTCAAGGATTACTTTATCTTCATAAGTACTCAAGGATCAAAATCATTCACAGAGACTTAAAAGCTAGTAACATACTTCTTGATGAGAGTATGAATccaaaaatttcagattttggaaTGGCAAGAATGTTTACACAAGAAGAATTCTCAGCAAATACCAACAAGATTGTTGGGACATAG 2040 0.3613 MGVFFKGNRLVLIYMWLWWSTCIRIRLANDSLHQGDTLNQTTTLYSKNGKYRLSFSETNPNNLANLVIRAVQYDFLVWIANRNQPVDIESAVLSLNHSGVLKIESQHVKPIILYTPPQTTNNTGCVRDLTLTNNMNKIMFISERQSLLHASAFEVDLSSNSKCRNTVATLLDTGNFVLQQLHPNGNKILLWQSFDYPTDVLIPGMKLGVNHRTGHKWSLTSRLTSSLRTSGAFKLEWEPIEGELIIKRHERVYWQSGKLRNNRFEHISKKAQRFYQYTILSNGDENSLTFTTLNGKFTRWTLLETGQLSSNEGDIARADVCYGYNTDGGCQRWEDIRKSKCRDPGDVFEKTMGNPNHDNVITEPNVSYGCSDCKASCWTNCNCTGFKRFYRNGTGCIFFLRNISIKDVAVDSSDDSFYMLVKKNRHNGTRKWIWRSVVIATALLIICAFILFIAIQKRKSMLKEKEKRETEIGMLNLATSNESSSIKDLEKELSKEHDLKIFSYTSVVVATNDFSSENKLGEGGFGPVYKGILPTGEEVAIKRLSKRSGQGIVEFRNELTLICELQHMNLVKLIGCCIDEEERILMYEYMPNKSLDFYIFDSARKMLLDWKKRFNIIEGISQGLLYLHKYSRIKIIHRDLKASNILLDESMNPKISDFGMARMFTQEEFSANTNKIVGT 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1760 679 ProSiteProfiles Bulb-type lectin domain profile. 29 191 IPR001480 -
Ssu8g1760 679 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 163 679 - -
Ssu8g1760 679 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 127 - -
Ssu8g1760 679 Pfam PAN-like domain 345 402 IPR003609 -
Ssu8g1760 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Ssu8g1760 679 Gene3D Phosphorylase Kinase; domain 1 456 589 - -
Ssu8g1760 679 Pfam Protein kinase domain 515 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1760 679 ProSiteProfiles Protein kinase domain profile. 514 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1760 679 SUPERFAMILY Protein kinase-like (PK-like) 492 679 IPR011009 -
Ssu8g1760 679 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 163 679 - -
Ssu8g1760 679 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 9 127 - -
Ssu8g1760 679 SMART blect_4 35 197 IPR001480 -
Ssu8g1760 679 SMART serkin_6 514 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1760 679 Gene3D Transferase(Phosphotransferase) domain 1 590 679 - -
Ssu8g1760 679 Pfam D-mannose binding lectin 129 222 IPR001480 -
Ssu8g1760 679 SUPERFAMILY alpha-D-mannose-specific plant lectins 162 218 IPR036426 -
Ssu8g1760 679 Gene3D - 24 195 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1760 Ssu-Chr8 44788287 44791764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1760 437 679 Receptor kinase-like Gene Family AT4G23190 49.383 7.77e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1760 Pkinase 9.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1760 - - vun:114168194 787.719