Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1754 ATGAGCATGTTAGGCCTGAGAGACCTAGTTTTCATAGCTCCAACCCCTTCCCTGCACCAAGGCCAACCCATTTCAGAAAACCACACTCCCAACCTTCCTCTGCCTTCTTCAGCTGCTCTCAGTGTTGGCTTTGGCATTTTCCCACTCCTCACTGCCACACCCTGCGTGCCACAGCCTCACCAAAACAATGAGGTTCAAGAGTGTGGTGATGGtgccaacaccaccaccaccaccaccaccaccaactaCTGGAACCTCAAGATGTGCCCGGAAGTGAATCCTTCAAAGAAGGGTGTGATCAACGTGGATGATGATGAGAAGGGTGTGATGGAGAGTGAGGAAAACGGGGTTTATGGGCCTGACTTCAGGGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGATATGATTGCAACACTCACGTGAAGAGCACGTGGGTACCCTCAACTCGCCGCCGGGAGAGGGAGACGGCGGTGGCtgccggtggtggtggtaaGAGGCCAAGAGCTATAGTGGGGTCATCACAAAATGCCACTGCCACTTCTCATAGTTCCAACTCTAATGCTACAACACCTAAGAGCTTAGCTGCTAGCTCTTCTCAACAAGATGCTAGCCTCAAACAGTCTTTACCAGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCATAGAGTCTCTGCCATTGGGAATGGTGAAAATGAATTTGCCTACTTGGCCACGGTCCATATTAGTGGCCATGTGTTCAAGGGGTTTCTCTATGATCATGGTGTTGATGGGAAAAACTCAAATGCAGTGCCTTGTGTTTCGGAACTGCAATTGGGAAACAATTGCAGTGGGAAGACCAGGGAATGTTCTTCTGTAATTGGGGTTCCAACCAACAATGCATACCCTGCTTCTGCGAGTTGA 948 0.4662 MSMLGLRDLVFIAPTPSLHQGQPISENHTPNLPLPSSAALSVGFGIFPLLTATPCVPQPHQNNEVQECGDGANTTTTTTTTNYWNLKMCPEVNPSKKGVINVDDDEKGVMESEENGVYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWVPSTRRRERETAVAAGGGGKRPRAIVGSSQNATATSHSSNSNATTPKSLAASSSQQDASLKQSLPGHVRAPAVFKCHRVSAIGNGENEFAYLATVHISGHVFKGFLYDHGVDGKNSNAVPCVSELQLGNNCSGKTRECSSVIGVPTNNAYPASAS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1754 315 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 314 IPR007818 GO:0003700|GO:0006355
Ssu8g1754 315 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 314 - -
Ssu8g1754 315 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 224 271 IPR006511 -
Ssu8g1754 315 Pfam Domain of unknown function (DUF702) 124 272 - -
Ssu8g1754 315 MobiDBLite consensus disorder prediction 163 224 - -
Ssu8g1754 315 MobiDBLite consensus disorder prediction 186 222 - -
Ssu8g1754 315 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 124 166 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1754 Ssu-Chr8 44594320 44595630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1754 1 288 C2H2 Transcription Factor Family AT5G12330 40.656 8.63e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu8g1754 DUF702 5e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1754 - - vun:114175485 526.939