Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1745 ATGTCCACCGACACAGCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTTTCTCAGCGCGACAGCGACGACCCAAGTTTCGCCGAGCGCTGCGAAATCTTCGGCGAGGGGGGCGAGGTCGGGTTGCGGACCCAGAGCGGCGTCGTTTTGGGTCCGCTGGTGGATTCGTCGCAATGCGGGGGCTCCAAAACCAAGAGGACGACCAAGATTGGGATGGTGAACGGGAGCGTGAGCGTGGTTCACCAGCTCCACGCTATGGTCACCCGCAAGTACACCAAAATCGACGCTTGCGTGGTGTGTGTCGAGGTGCCTAGGGTTGTGGTGCTGGTTGACGTGTACCTCCCCATTCAGGTGTGGAGTGGCTGGCAGTTCCCACGATCGGGGCCCGTCGCCGGCGCCGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGAGAAGTTCAATGCTTTCATATCCAGATTATTGTAGGAAGACTCATGGAGCAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCCCGTGTGAGCAATTCTTCAAGGAAAAGGCTATTTGAACTTCATGAAATATTTAAGACGCTACCTAGCGTAGGAAAACGGCAGACGTTTAATAGTTCCAAGATAATACCTATGGATAACACTTGCAGATCAGGCATTTGGGAGATATCTGAtgatattttaactaaaattttagcttcCTTGGGCCCAATGGACCTCACTAGGGTTTCTGCAACATGTCATCATCTAAGATCCCTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGTTGAGCTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATTGTCTCTGGGGAAGCTCCTACTATCAAGGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTGTCTCTTATTATGAAGACACGAGGTACATTGGCAGACCCGCCAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGCTATTATGAGATCAGTGGTAATAACATCACTGGTTGTACTACCTTGGGTAAGAGGGATGGGTGCCAAGATACCAGTAGAACTAATGATAACCATGATTACTCCTCCAAAAGAGCGAGATTGACAGATCCTGATCATCAGATCACTAAACTTCATGGTTCATGTTCCAGGGAAGAAAACAAATCACCTGTAGATGCATGCTTTAAGGAATCTATGCATTCAAATCGGTTCACTAGGAGTTTAAGTCGCATCAAGAAAAATCTACATTTCACATATGAAGAGGAAGCTATGATTTCCAAGGAAAGAGAAATTGGTGAAGGATTAATTAAAGCAAAGCATGCAGCAGATGCTACATCTCATGTATTTAAAAACAAGCTAGTTAATACTTCCTGTGGACGTGGACAGAATTACAAGTGGCCTGGGAAGCCTAGAGGTGATTGTTTGGAGTACAGTGATACATGGATTCAGTGTGATGCTTGCCACAAGTGGCGAAAGCTTGCAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGCACACTGACCCTTTGTATCAAAGTTGTAGTGTCCCCGAACAATCTTTTCATAATACCTGTAAGATAACACACTTGCCAGGGTTTCACTTGAAAGGAACTTGTGGTGGTGAGAAacaaaatgtttcttttttcactAGCGTGCTTAAGGAGCACTTCTCATTGATAAATTCTCAGACAAAGAAGGCTCTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGCATAAGGGGTCCTATTTTAAACACTTGTACCGCATCTAATGGACGTTTCAATGCATTCcacaaaatatttcaagcatttgGCCTCCTAAAGAGAGTAGAGAAAGGTGTGTGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCACTCTGTGAGCCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAACATGTGAGGCCTGGTCAATTGCGGGTTTATGTTTGGACTGATCACCAGAAGCCATCTGCGCATTGTCTTGCGTGGGATTATGATGTTGTCATCACTACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGGTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAATCGATGGATACTAACAGGAACTCCAACACCTAACACTCCTAACAGCCAACTTCCACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTACATTTACTTCACAAATGCATGATTAGTGCTAGAAAGATTGATTTACAAAGCATTCCACCATGCATCAAGAAAGTTGTTTATCTAGATTTTAATGAGCAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTACGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTAGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTGGTACAAAGTGGTCTAGATCCTACTTCAGGAGAGTATAGCTCCATAAGATATAATCTCTTGTTTGGTGGTCATTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGCTCATTACACCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACAACACAAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGACTGCCCCGACCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTGAAAGCTTTGCAAGGAACCAATGAAGAGACAAGCTTCAATACAGACAATAGCAATGATGAGATGCATATTGAGAATAGTTTCTATTTGCATAGAAGAGATGACAAATCATCAATTCAGAAATATTCTATGAGCAGCACCAAGACCAATTTGAACCCTGAGAAAGTTCtgatattttctcaatttcttgAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAAGAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCTCGTCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGACTTTTTACAGGATGCTGATAAATTTAGAAGATCGCCAATTAAGGATGTTGCCGAATCTGAAGATGATAGTGGGGGACGAGGATATAGATCATTGCATGATTTTGCTGAAAGCAGTTATCTGCTGAAACTTAGATCTGTTTGTACTAATTCGGAAAGTCCAAAAGGTGTTTGA 3987 0.4229 MSTDTAFADHKLCGFLCAVLTVSQRDSDDPSFAERCEIFGEGGEVGLRTQSGVVLGPLVDSSQCGGSKTKRTTKIGMVNGSVSVVHQLHAMVTRKYTKIDACVVCVEVPRVVVLVDVYLPIQVWSGWQFPRSGPVAGAVFRHLSCDWDERSSMLSYPDYCRKTHGANESIWNLSDCHVLGCKLHSRVSNSSRKRLFELHEIFKTLPSVGKRQTFNSSKIIPMDNTCRSGIWEISDDILTKILASLGPMDLTRVSATCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNVELLPHPLYVALSTDDGFSFHVNTVSGEIVSGEAPTIKDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDGAQVVWCQHNGNQKCGYYEISGNNITGCTTLGKRDGCQDTSRTNDNHDYSSKRARLTDPDHQITKLHGSCSREENKSPVDACFKESMHSNRFTRSLSRIKKNLHFTYEEEAMISKEREIGEGLIKAKHAADATSHVFKNKLVNTSCGRGQNYKWPGKPRGDCLEYSDTWIQCDACHKWRKLADNSMANSSAAWFCSMHTDPLYQSCSVPEQSFHNTCKITHLPGFHLKGTCGGEKQNVSFFTSVLKEHFSLINSQTKKALTWLAKISTDKLAGMETNGIRGPILNTCTASNGRFNAFHKIFQAFGLLKRVEKGVCRWYYPQNLNNLTFDVAALGMALCEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHQKPSAHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKKVVYLDFNEQHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYSSIRYNLLFGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALQGTNEETSFNTDNSNDEMHIENSFYLHRRDDKSSIQKYSMSSTKTNLNPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSKKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLDFLQDADKFRRSPIKDVAESEDDSGGRGYRSLHDFAESSYLLKLRSVCTNSESPKGV 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1745 1328 Gene3D - 1067 1312 IPR027417 -
Ssu8g1745 1328 Pfam Helicase conserved C-terminal domain 1149 1250 IPR001650 -
Ssu8g1745 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 885 IPR027417 -
Ssu8g1745 1328 ProSitePatterns Zinc finger RING-type signature. 1024 1033 IPR017907 -
Ssu8g1745 1328 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 681 846 IPR014001 -
Ssu8g1745 1328 PANTHER OS01G0952200 PROTEIN 33 1309 - -
Ssu8g1745 1328 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 33 1309 - -
Ssu8g1745 1328 Gene3D - 699 890 IPR038718 -
Ssu8g1745 1328 CDD SF2_C_SNF 1153 1260 - -
Ssu8g1745 1328 Pfam SNF2-related domain 278 932 IPR000330 GO:0005524|GO:0140658
Ssu8g1745 1328 CDD DEXDc_SHPRH-like 710 887 - -
Ssu8g1745 1328 ProSiteProfiles Zinc finger CW-type profile. 528 579 IPR011124 GO:0008270
Ssu8g1745 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 357 IPR027417 -
Ssu8g1745 1328 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1144 1296 IPR001650 -
Ssu8g1745 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 1306 IPR027417 -
Ssu8g1745 1328 Gene3D - 529 581 - -
Ssu8g1745 1328 SMART ultradead3 271 857 IPR014001 -
Ssu8g1745 1328 SMART fbox_2 233 273 IPR001810 GO:0005515
Ssu8g1745 1328 SUPERFAMILY F-box domain 224 266 IPR036047 GO:0005515
Ssu8g1745 1328 SMART helicmild6 1168 1250 IPR001650 -
Ssu8g1745 1328 Pfam F-box domain 233 267 IPR001810 GO:0005515
Ssu8g1745 1328 Pfam CW-type Zinc Finger 533 576 IPR011124 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1745 716 1270 RAD5 or RAD16-like Gene Family AT5G22750 25.378 2.37e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu8g1745 SNF2_N 2.3e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1745 - - gmx:100803102 2434.83