Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1737 ATGACTGATAGGCCTTTGTTTAAGACAAGCATGGCCTCTAAAGAATTAAAAGCAGAGAAGCAGCAAAGATCGGAGGAAGAAGCAGATGAAACAGCAAGGGAAGTAGAATGTTTGGTTAAGATGTCTGTTCAACATGAAAATTCTAATACCAAGGGTGTATCagGATCAGGATCTTGCCTTTATGATCTCTTATGTTCTGAAACACCAAGTTTGAATACTATAAGTCAAAGAGAACGATGGATGTCATCTGGTCCACAAAAAAGGCTAGACAATCTTATGTGTCAAGCTGGGAACAAGTATTGCGCTGATTGTGGATCATTAGAGCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAATGCTCTGGTATACATagaagcttaggtgtccatataTCAAAGGTTCTATCACTAAAGCTAGATGAATGGTCAGATGAACAAGTTGATGCATTGGTGAAGTTGGGTGGAAATACACTAATTAACAAGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCTTCCATTGAGGAGCGCTCTGATTTTATTAGgAGAAAATATGAGCTACTGCAATTTTTGGATACTAAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCATGCAAGAAGCTCATCATACTCTCAGAACAATTCCTCAAAGAACAATTCCCCACAAGACAAAAAGCATTATGATAAACAACCAACTAAAAATCGTATTGGGAATGCATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAGCATAAGAGTTCAAAGAAGAACAACTCATTGGCAGGTATGATTGAATTTGTTGGGCTGATTAAGGTCAATGTGGTTAAAGGCACTAACCTAGCTGTCCGTGATGTAATGACTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTTATAAAGAACAACTTAAATCCAGTCTGGAATGAAAGCCTAATGTTGTCAATTCCTGATCACATTCCTCCTCTTAAAGTGGTTGTGTACGACAAGGATACTTTTTCAACTGATGATTTTATGGGTGAGGCTGAAATTAACATTCAACCTCTACTTACAGCTGCAAAGGCATATGAGAAATCTTCAATCAATGAGTCCATGCAACTTGGAAAATGGGTAGCAAATGGCGACAACACTCTTGTTAAAGATGGTATCATCTTCCTTGAAGATGGGAAGGTTAGACAAGATATCTCAATGAGGCTACAACATGTCGAGAGGGGTGTGCTGGAGATTGAACTTGAATGTGTTCCTTTAACTCAGTAA 1308 0.3754 MTDRPLFKTSMASKELKAEKQQRSEEEADETAREVECLVKMSVQHENSNTKGVSGSGSCLYDLLCSETPSLNTISQRERWMSSGPQKRLDNLMCQAGNKYCADCGSLEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWSDEQVDALVKLGGNTLINKKYEACLPSNIKKPKPNSSIEERSDFIRRKYELLQFLDTKENLSCPFVPSHARSSSYSQNNSSKNNSPQDKKHYDKQPTKNRIGNAFRNSWGRKDSEHKSSKKNNSLAGMIEFVGLIKVNVVKGTNLAVRDVMTSDPYVIISLGHQSVKTRVIKNNLNPVWNESLMLSIPDHIPPLKVVVYDKDTFSTDDFMGEAEINIQPLLTAAKAYEKSSINESMQLGKWVANGDNTLVKDGIIFLEDGKVRQDISMRLQHVERGVLEIELECVPLTQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1737 435 CDD C2_ArfGAP 278 422 - -
Ssu8g1737 435 SUPERFAMILY ArfGap/RecO-like zinc finger 86 201 IPR037278 -
Ssu8g1737 435 MobiDBLite consensus disorder prediction 1 30 - -
Ssu8g1737 435 Gene3D Arf GTPase activating protein 70 208 IPR038508 -
Ssu8g1737 435 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 435 IPR044518 GO:0005096|GO:0005543
Ssu8g1737 435 CDD ArfGap 89 195 - -
Ssu8g1737 435 Pfam C2 domain 280 370 IPR000008 -
Ssu8g1737 435 SMART arf_gap_3 86 208 IPR001164 GO:0005096
Ssu8g1737 435 PRINTS HIV Rev interacting protein signature 117 134 IPR001164 GO:0005096
Ssu8g1737 435 PRINTS HIV Rev interacting protein signature 98 117 IPR001164 GO:0005096
Ssu8g1737 435 PRINTS HIV Rev interacting protein signature 138 159 IPR001164 GO:0005096
Ssu8g1737 435 MobiDBLite consensus disorder prediction 13 30 - -
Ssu8g1737 435 ProSiteProfiles ARF GTPase-activating proteins domain profile. 86 208 IPR001164 GO:0005096
Ssu8g1737 435 MobiDBLite consensus disorder prediction 215 231 - -
Ssu8g1737 435 ProSiteProfiles C2 domain profile. 258 377 IPR000008 -
Ssu8g1737 435 Gene3D C2 domain 278 434 IPR035892 -
Ssu8g1737 435 SMART C2_3c 280 375 IPR000008 -
Ssu8g1737 435 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 278 370 IPR035892 -
Ssu8g1737 435 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 41 435 - -
Ssu8g1737 435 MobiDBLite consensus disorder prediction 215 267 - -
Ssu8g1737 435 Pfam Putative GTPase activating protein for Arf 87 201 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1737 Ssu-Chr8 43470962 43481862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1737 86 435 C2H2 Transcription Factor Family AT4G21160 46.724 9.57e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1737 K12486 - gmx:100799376 686.026