Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1736 ATGAGCAAAGTCAGTTGTTGTGTTCTTCTATCCCTTCTTGTTCTTTCTACTTTTGTGGCTGAAATTCATGGAAACAAACAAGCTCAAGCTCTTGACAAGTTGCACAAGTCCAAGTTCAAAGCAAATTCGCAAATTGATGATAGGAGTCACTTTGAGGCACGAGATCTTCTTGTGCATGATGTCGTGGTTGATTCTCAATTAGGTCTGAAAGAGAAAGACAAGATTGAGAAGCTACCAGGGCAACCTAAAGCGAAGTTCTCTCAATATGGAGGGTATGTCACGGTGGATAAATTAGCAGGGCGTgccttttattattactttgcaGAAGCTCAACGTTCTAAAGAATCATTGCCTCTTCTTCTTTGGCTCAACGGAGGTCCTGGTTGTTCGTCTCTTGGCTATGGAGCCATGGAAGAACTTGGACCCTTTCGTGTAAACAGTGATGGGAAAACGCTACACAAAAATAGATATTCATGGAACTATGCTGCAAATATTTTGTTCCTCGAATCACCTGCCGGTGTAGGATTTTCTTACTCGAACAAATCATCTGATTACGATACCAATGGGGATAGGAAAACAGCAGCAGATAACTATGTGTTCTTAATGAATTGGTTGGAGAGATTTcctgagtacaagaatagagaTTTCTACATTGCTGGAGAGAGCTATGGTGGACATTATGTCCCTCAACTTGCACACAATATTCTCtaccaaaacaaaaagggtAATAACAAGACAATCATCAACCTCAAAGGAATAATGATTGGGAATGCAGTGATCAATCAAGAAACAGATGCGCGAGGACCATATGATTTTCTTGCTAGCCATGCATTCATCTCTGATCAAACAGCACATGATATCaacaaattttgtgatttctcaCTTAGCCATCAGACTAGTAAGTGCAATGCAGCATTAGACAAAGCTGCCAGTGATACTTCGTTCATTGATTGGTACAACATATATGCTCCACAATGCCACAATACCAACCTCACTACCTTGCCAAAGAAGAACTGGGTTGTTTTTGATCCATGTAGTGATAATTATGTGCATGCATATCTTAACCGGCGTGATGTTCAAGAGGCCTTACATGCCAATGTCACCAAACTCAAATACAATTGGGAGTCCTGTAGCAATATCATTTCAAAGTGGGGGGATAGCCCTTCAACAATCATTCCCCTTTTACATGAATTCCTTAATAATGGACTTAGGGTTTGGGTTTATAGTGGTGATATAGATGCAGTGGTACCTGTTACATCAACCAAGTATTCCATTAACAAGATGAAGCTTCCAATTAAGACTGCTTGGCATCCTTGGTTCATATTTGGAGAGGTTGGTGGCTATACTCAAGTTTACAAGGGAGGTTTAACTTTTGCCACAGTAAGGGAAGCAGGGCATGAAGTACCAAGCTACCAGCCAGCAAGAGCCTTTTCTCTTGTCAAACATTTTTTAGATGGCACTCCTCTTCCCAATACTATAAAAAAtagctaa 1491 0.3856 MSKVSCCVLLSLLVLSTFVAEIHGNKQAQALDKLHKSKFKANSQIDDRSHFEARDLLVHDVVVDSQLGLKEKDKIEKLPGQPKAKFSQYGGYVTVDKLAGRAFYYYFAEAQRSKESLPLLLWLNGGPGCSSLGYGAMEELGPFRVNSDGKTLHKNRYSWNYAANILFLESPAGVGFSYSNKSSDYDTNGDRKTAADNYVFLMNWLERFPEYKNRDFYIAGESYGGHYVPQLAHNILYQNKKGNNKTIINLKGIMIGNAVINQETDARGPYDFLASHAFISDQTAHDINKFCDFSLSHQTSKCNAALDKAASDTSFIDWYNIYAPQCHNTNLTTLPKKNWVVFDPCSDNYVHAYLNRRDVQEALHANVTKLKYNWESCSNIISKWGDSPSTIIPLLHEFLNNGLRVWVYSGDIDAVVPVTSTKYSINKMKLPIKTAWHPWFIFGEVGGYTQVYKGGLTFATVREAGHEVPSYQPARAFSLVKHFLDGTPLPNTIKNS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1736 496 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Ssu8g1736 496 Gene3D - 391 486 - -
Ssu8g1736 496 Gene3D alpha/beta hydrolase 69 328 IPR029058 -
Ssu8g1736 496 SUPERFAMILY alpha/beta-Hydrolases 73 490 IPR029058 -
Ssu8g1736 496 Pfam Serine carboxypeptidase 80 486 IPR001563 GO:0004185|GO:0006508
Ssu8g1736 496 Gene3D - 345 381 - -
Ssu8g1736 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Ssu8g1736 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Ssu8g1736 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Ssu8g1736 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Ssu8g1736 496 PANTHER CARBOXYPEPTIDASE 8 490 - -
Ssu8g1736 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 490 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1736 Ssu-Chr8 43448902 43455874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1736 353 489 Calmodulin-binding Proteins AT2G22960 32.847 8.14e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1736 K16297 - gmx:100804815 737.643