Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1733 ATGGCATCTAGTCATCCGTTCTTTGATGATATACGGAGCAGATCTAGTGTTGATCCTCCTCAAACTGAAGAGTCAACTGAAATTGGTGAAATTGTGAATGATCTGCAGACTGCTCTTAAACCTCATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGTTTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGACCGGTGTCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAGGTGGCTGCATCATTAGAACTTCCCTGTAAATATGAAGGTTTTGGGTGCGTGGGCATATTCCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGGCCTTATAACTGTCCATATGCTGGTTCAGAATGTTCTGTTATGGGTGATATACCTTACCTGGTGGCCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTTAATCATCGCTATGTCAAAACAAATCCACAAGAAGTTGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTCGGTCAGTACTTTTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCGTTTTTGCGGTTTATGGGGGATGACAACAAGGCGAAGAACTATACCTACAGTCTCGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATTAGGGATAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAACATGGCTATGTTCTTTTCTGGGGGTGACCGGAACGAATTGAAACTGCGAGTCACTGGGAGAATTTGGAAAGAACAGTGA 912 0.4441 MASSHPFFDDIRSRSSVDPPQTEESTEIGEIVNDLQTALKPHGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYEGFGCVGIFPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVAHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNKAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMAMFFSGGDRNELKLRVTGRIWKEQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1733 303 MobiDBLite consensus disorder prediction 1 25 - -
Ssu8g1733 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 162 IPR013083 -
Ssu8g1733 303 CDD Sina 169 297 - -
Ssu8g1733 303 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 303 - -
Ssu8g1733 303 CDD RING-HC_SIAHs 53 91 - -
Ssu8g1733 303 ProSiteProfiles Zinc finger SIAH-type profile. 108 168 IPR013010 GO:0008270
Ssu8g1733 303 Pfam Seven in absentia protein family 97 296 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu8g1733 303 ProSiteProfiles Zinc finger RING-type profile. 55 91 IPR001841 -
Ssu8g1733 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 106 IPR013083 -
Ssu8g1733 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 303 - -
Ssu8g1733 303 SUPERFAMILY RING/U-box 47 95 - -
Ssu8g1733 303 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 296 IPR008974 GO:0005515
Ssu8g1733 303 SUPERFAMILY TRAF domain-like 108 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1733 Ssu-Chr8 43207513 43209857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1733 46 303 C3H Transcription Factor Family AT2G41980 78.682 4.76e-160 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1733 K04506 - gmx:100793457 601.282