Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1715 ATGGTGCACTGTTTCTTCTTCTGCCTCATTTCCACTCTATCTATCCAAGGCATCCTTACTATTACTCCAAATGAGGTTATCCAAGGCACCAAGACCCTTGTTTCTGCAACTGGAACTTTTGAAGCAGGATTCTTCAACTCTGGAAATTCACAAAGCCAGTACTTTGGTATATGGTACAAGAACATATCACCAAGGACTATTGTGTGGGTTGCCAACAGAGATGCCCCAGTGAAAAACTCAACAGCATTTCTGACACTAACAGATCAAGGAGATCCTGTTATTCTTGATGGCTCAAAGGGCATCACTGTGTGGTACTCCAACGCATCAAGAATTGCTGAGAAACCAATCATGCAGCTTCTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGACAGCAGAGAGAAATTTTTGTGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTGGGACAAATTTTGTCACTGGTCCTTATAGGTCTCTTATATCTTGGAAAAACGCGGAAGATCCTGGTTCTGGTGATTTTTCCTATCACATGGATGCTCATGGCTTTCCTCAACTGGTTACTACAAAGGGATCAAGTTTGCTTAGCAGAGCAGGGTCCCGGAATGGCCATGTTTTCAATGGAGTTTCATGGCGAAGAATGCTTAGAATCTTCAAATTTTCTCTGGTGTTTACTGAGAAGGAAATCATTTACCAATATGAAACCTTGAAGGCTGAAACTGTTTCTAGGTTAATGCTCAATCCGTCGGGCTTAGCACAACGTTTGATATGGTCAGATAACCGAGGTTGGGAGATTATATCTACTCGTCCCATGGATCAGTGTGATTATTATGCCTTTTGTGATGTCAATTCTGTGTGTAACGTTACTAACTCTCCAAAAATATGTGCATGCTTGGAAGGTTTTGTACCCAAATTCCATGAGAAGTGGAGTTCATTAGATTGGTCAGGTGGGTGTGTTAGAAGAATAAACTTAAGTTGTGATGGTGGAGATGGGTTTCAGAAGTACACGGGAATGAAGTTGCCAGACACTTCTTCTTGGTATGACAGAAGTTTAAGCCTTGAGAAATGTGAGAAATTGTGTTTGGAAAACTGCTCTTGTACAGCATATGCAAGTATAGATGTCAATAGGAAAGGGTGCTTGTTTTGGTTTGATAACATTGTGGACTTGACCAAACACACAGACCAAGGACAAGATATTTACATAAGACTTGCAGCTTCAGAGTTAGATCATCATAGAGGGAATAACCAGAGCTTTGATAACAAGAAGCTTGCAGGGATACTAGTAGGCATTGTTGCATTCATCATGGTTCTTGGATTGGCCACATTCACATATATAAAGAGGAAGAAGCTCGCAAAGAGAGggattctaaaaatatttcactGGAAGTACAAAAGGGATAAGGAAGACGTGGAGTTAtcaacaatatttgatttttcaacCGTCTCCAGTGCCACAAATCACTTTTCTGACAGTAACAAGTTAGGAGAAGGTGGCTTTGGACCAGTATACAAGGGTATATTGCAAAATGGGCAAGAGATTGCAGTCAAGAGGCTTGCAAAAACTTCTGAACAAGGAGCAGAGCAGTTCAAAAATGAAGTCATGTTGATGGCAAAACTTCAGCACCGCAATCTTGTAAAACTTCTTGGTTGTTCTATTCACCAAAAAGAAAGGCTCTTGATCTACGAATACATGTCCAACAGAAGCTTGGATTACTTTATTTTTGGTCTGAAATTTCACACTAGGCAAATTATGGTTCTTCATTTTGCTCTTGCTATTATGTGGTTGTTACACTGA 1812 0.3974 MVHCFFFCLISTLSIQGILTITPNEVIQGTKTLVSATGTFEAGFFNSGNSQSQYFGIWYKNISPRTIVWVANRDAPVKNSTAFLTLTDQGDPVILDGSKGITVWYSNASRIAEKPIMQLLDSGNLVVKDGDSREKFLWESFDYPGDTFLAGMKLGTNFVTGPYRSLISWKNAEDPGSGDFSYHMDAHGFPQLVTTKGSSLLSRAGSRNGHVFNGVSWRRMLRIFKFSLVFTEKEIIYQYETLKAETVSRLMLNPSGLAQRLIWSDNRGWEIISTRPMDQCDYYAFCDVNSVCNVTNSPKICACLEGFVPKFHEKWSSLDWSGGCVRRINLSCDGGDGFQKYTGMKLPDTSSWYDRSLSLEKCEKLCLENCSCTAYASIDVNRKGCLFWFDNIVDLTKHTDQGQDIYIRLAASELDHHRGNNQSFDNKKLAGILVGIVAFIMVLGLATFTYIKRKKLAKRGILKIFHWKYKRDKEDVELSTIFDFSTVSSATNHFSDSNKLGEGGFGPVYKGILQNGQEIAVKRLAKTSEQGAEQFKNEVMLMAKLQHRNLVKLLGCSIHQKERLLIYEYMSNRSLDYFIFGLKFHTRQIMVLHFALAIMWLLH 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1715 603 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 583 - -
Ssu8g1715 603 CDD TM_EGFR-like 429 458 - -
Ssu8g1715 603 Gene3D Phosphorylase Kinase; domain 1 467 569 - -
Ssu8g1715 603 Pfam D-mannose binding lectin 66 170 IPR001480 -
Ssu8g1715 603 SUPERFAMILY Protein kinase-like (PK-like) 473 590 IPR011009 -
Ssu8g1715 603 CDD PAN_AP_plant 329 410 - -
Ssu8g1715 603 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 175 IPR036426 -
Ssu8g1715 603 Pfam Protein tyrosine and serine/threonine kinase 497 582 IPR001245 GO:0004672|GO:0006468
Ssu8g1715 603 ProSiteProfiles PAN/Apple domain profile. 332 410 IPR003609 -
Ssu8g1715 603 Pfam S-locus glycoprotein domain 203 311 IPR000858 GO:0048544
Ssu8g1715 603 Gene3D Hepatocyte Growth Factor 329 411 - -
Ssu8g1715 603 ProSiteProfiles Bulb-type lectin domain profile. 18 140 IPR001480 -
Ssu8g1715 603 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 11 583 - -
Ssu8g1715 603 Pfam PAN-like domain 332 395 IPR003609 -
Ssu8g1715 603 SMART blect_4 24 144 IPR001480 -
Ssu8g1715 603 Gene3D - 18 141 IPR036426 -
Ssu8g1715 603 ProSiteProfiles Protein kinase domain profile. 494 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1715 603 SMART ntp_6 333 409 IPR003609 -
Ssu8g1715 603 SUPERFAMILY Hairpin loop containing domain-like 336 394 - -
Ssu8g1715 603 CDD B_lectin 24 144 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1715 Ssu-Chr8 42469627 42472107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1715 430 580 Receptor kinase-like Gene Family AT4G23190 47.205 2.56e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1715 S_locus_glycop 9.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1715 - - gmx:100803275 972.615