Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1714 ATGGCAGTAGAGGTGGTTGGGGGGGCATTTCTCTCGGCCTCCCTTCAAGTGACTTTTGACAGGTTGGCTTCAAGTGACATCAAAGACTACTTCCATGGAAGGAAGCTCAAGGATGAGATGCTCAAAAAGTTAGACATTGCACTGAACTCTATCAACCAAGTGCTGGAGGATGCAGAGGAAAGGCAGTACAAAAACCCAAACGTGATGAAGTGGCTTGATGAGCTCAAAGAGGCTATATATGAGGCAGAGTTGCTGTTAGATGAGGTTGCCACGGAGGCATCGCGATTGAAGCTGGAAGCTGAATTTCAGCCTGCTACTAGCAAGGTGCGAGGCTTCTTCACGGCTTTTATTAATCCATTTGACAAAGAAATTGCATCTAGGGTCAAAGAAGTATTAGAGAACATAAAATTTCTGGCAGAGCAAAAGGATATGCTAGGATTGAGAAAGGGAACTTGTGCTGGCAATGGAGTTGGAGTCAGTTGGAAACTCTCCAACAGATTGCCAACTACATCCTTGGTGGATGAATCAAGCATATGTGGTAGAGAGGGTGATAAAGaggaaataatcaaaattttacttttagacAATGTTACATGCAATCAGGTGCCAATAGTTAGTATAGTGGGTATGGGAGGGATGGGTAAGACCACCCTTGCTCAGCTTGTGTATAATGACCAAAGGATACTGGATCAATTTGACCTTAAAGCTTGGGTCTATGTTTCACAAGATTTTGATGTTGTTGCTGTCACAAAAGCAATTCTTAAGGCACTTCGGTCCCCAGCAGCAGAAGAAAAAGACTTAAATCTGCTTCAACTTGAACTGAAGCAGAGACTGATGGGGAAGAAATTTTTGCTTGTTTTAGATGATGTTTGGAACGAAAACTATTCGAGTTGGGAGGTACTACAAATCCCCTTCATTTTTGGATCTTCTGGAAGTAGGATTCTTGTTACCACACGTACTACAAAGTTAGCATCAGTCATGAACTCCTCCCAACTACTTCATTTAAAGCCATTGGAGAAAGAAGATTGTTGGAAGCTGTTTGCGAAATTTGCATTTCATGACAAGGATACCAGCAAATATCCAAATCTTGTATCAGTTGGCAGTAAAATTGTTGACAAGTGTGGAGGATTGCCTTTAGCTATAAAAACATTGGGAAATATCTTGCGAGCAAAATTCTCCCAGCACGAATGGGTTAAGATATTGGAAAGTGATATGTGGCACTTATCAGACAATGATAGCAGCATTAACCCTGCTCTGAGATTGAGTTACCACAATCTTCCTTCCTATCTGAAGCGCTGTTTTGCTTATTGTTCCATATTTCCCAAAGGTTATGAGTTTGACAGGGATCAGTTAATTCAGTTGTGGATGGCAGAAGGTTTGTTGAATTGCTGCCGAATAAATAAGAGTGAAGAAGAGTTAGGTAGTGAGTTCTTCAACGATTTAGTGGCAAGGTCATTTTTCCAACAATCAAGACGCCGTGGTTCTCACTTCACTATGCATGATCTTCTTAATGATTTAGCAAAGTCCGTGTCAGGAGATTTTTGTTTACAAATAGAGGGTAATTTGGTGCAAGATATACCTAAGAGAACACGACACATTTCATGGTCTCACAAATGTAACCTTGATGATAAATTTTTGGAACATATTTGTAAGTGTAACAGATTGCGTTGTCTTATGGCACTCCCATGGGGATTTGGCAGGAGAGGCTTGATGAACAGCAATGCACAACgtattttgttttctagaataaaatatttgcgTGTGTTATCCTTCAACAATTGTCTTCTCACAGAGTTAGTTGATGATATAAGCAATTTAAAGCTTTTGCGTTATCTAGACCTTTCGTACACTAAGATTAAAAGACTGCCTGACTCCATTTGTATGCTGCATAATTTGCAGACACTAATACTAGTATGGTGCTATCATTTGACGGAGCTCCCCTTAGATTTGCACAAACTTGTCAATTTGCGTCATCTTGATGTGTGTATGAGTGGAATAAATAAGATGCCAAAGCACATAGGAGGGCTGAAACATCTTCAGACCCTGACTTGTTTTTACATCCGGAAGCATAGTGGGTTTGATGTTAAGGAGTTGGGGAATCTCAACCATCTCCAAGGAACACTTTCAATTTTGAAGTTAGAAAATGTCACTGATCCTGCAGATGCCATGGAGgctaaaatgaaagataaaaagcaTTTAGAAGGATTAGTGTTGAATTGGGGTGACAAATTTGGAAGGTGCAATGAAAATGATGATTCAATAATAGAAAGACACGTGTTGGAGGCTCTTCAACCAAATGGGAACTTGAAAACGCTTACTGTTTTACGTTATGATGGAACTAGCTTTCCAAGTTGGTTTGGAGGTTCTCATTTACCCAATTTAGTATCTATTACGCTGATTGAAAGtaaattctgttttattttgcCACCATTTGGGCAGCTCCCATCTCTGAAGGAGCTTTCTATATCATGCTTTTACGGGATAGAGGTCATTGGTCCTGAGTTTTGCGGTAATGATTGCTCAAATATTCCATTCAGATCTCTTgaagttttgaaatttgaggAAATGAGTGCATGGAAAGAATGGTGCAGTTTTGAAGGTCACAGTGAAGGTGAAGGTTTGTCTTGTCTTAAAGAGCTTTCTATAAAGCGCTGTCCTTGGTTGAGAAGGGCCCTGCCTCAACACCTTCCTTCTTTGCAAAAATTGGTAATTTTTGAATGCCAACACTTAGAGGATTCAGTTTCCAAGGCTGCTAGTATTCATGAGCTAGAGTTGCGTAGATGTGAAAAAATTTTGCTTAAAGATTTGCCATCCAGCTTGAAGAAGACCACAATTCATGGAACTCGTGTCATTGAGTCTTGCCTTGAGCAAATTCTGCTCAACAACGCCTTTCTTGAAGAGTTGAAAATACATGACTTCCATGGTCCAAATCTAAAATGGTCCTCTTTGGATTTGCATAGACATGATTCTCTTGGCACTCTATCTGTAACTTGCTGGTGCTCCTCCTCATTGCCTTTTCCATTAGACTTGTTTGCCAATCTTCATTCTCTACATTTCAATGATTGTCCACAGCTTGAGTCATTTCCAAAGGGGGGTTTGCCTTCAAGCCTGTGCAGACTCGAAATTGAGGGTTGCCCCAAACTGGTTGCCTCTAGGGAGGAGTGGGGATTGTTCAAACTTCAATCTCTGAAAGAGTTGAGGGTTAGTGATGACTTTGAAAACGTGGTGTCTTTCCCAGAGGAGAGGTTGCTACCCCCCACTCTCAGTGATCTCTACTTAACTGATTGTACAAAGCTAACAACGACAAACTCTATGGGTTTTCTCCACCTCAAATCTCTCAAATCCTTCTATATTCTCCATTGCCCTCGTCTTCGGTACTTGCCAGAAGAAGGTTTACCCAACTCTCTTTCTGTTCTGTGTATTCAGGACTGCCCTTCACTTGAGCAGCGGTACCAAAAGGATGGAGAGCATTGGCATAAAATTCACCACATCCCTTCTGTCACAATTAGTTAG 3513 0.3991 MAVEVVGGAFLSASLQVTFDRLASSDIKDYFHGRKLKDEMLKKLDIALNSINQVLEDAEERQYKNPNVMKWLDELKEAIYEAELLLDEVATEASRLKLEAEFQPATSKVRGFFTAFINPFDKEIASRVKEVLENIKFLAEQKDMLGLRKGTCAGNGVGVSWKLSNRLPTTSLVDESSICGREGDKEEIIKILLLDNVTCNQVPIVSIVGMGGMGKTTLAQLVYNDQRILDQFDLKAWVYVSQDFDVVAVTKAILKALRSPAAEEKDLNLLQLELKQRLMGKKFLLVLDDVWNENYSSWEVLQIPFIFGSSGSRILVTTRTTKLASVMNSSQLLHLKPLEKEDCWKLFAKFAFHDKDTSKYPNLVSVGSKIVDKCGGLPLAIKTLGNILRAKFSQHEWVKILESDMWHLSDNDSSINPALRLSYHNLPSYLKRCFAYCSIFPKGYEFDRDQLIQLWMAEGLLNCCRINKSEEELGSEFFNDLVARSFFQQSRRRGSHFTMHDLLNDLAKSVSGDFCLQIEGNLVQDIPKRTRHISWSHKCNLDDKFLEHICKCNRLRCLMALPWGFGRRGLMNSNAQRILFSRIKYLRVLSFNNCLLTELVDDISNLKLLRYLDLSYTKIKRLPDSICMLHNLQTLILVWCYHLTELPLDLHKLVNLRHLDVCMSGINKMPKHIGGLKHLQTLTCFYIRKHSGFDVKELGNLNHLQGTLSILKLENVTDPADAMEAKMKDKKHLEGLVLNWGDKFGRCNENDDSIIERHVLEALQPNGNLKTLTVLRYDGTSFPSWFGGSHLPNLVSITLIESKFCFILPPFGQLPSLKELSISCFYGIEVIGPEFCGNDCSNIPFRSLEVLKFEEMSAWKEWCSFEGHSEGEGLSCLKELSIKRCPWLRRALPQHLPSLQKLVIFECQHLEDSVSKAASIHELELRRCEKILLKDLPSSLKKTTIHGTRVIESCLEQILLNNAFLEELKIHDFHGPNLKWSSLDLHRHDSLGTLSVTCWCSSSLPFPLDLFANLHSLHFNDCPQLESFPKGGLPSSLCRLEIEGCPKLVASREEWGLFKLQSLKELRVSDDFENVVSFPEERLLPPTLSDLYLTDCTKLTTTNSMGFLHLKSLKSFYILHCPRLRYLPEEGLPNSLSVLCIQDCPSLEQRYQKDGEHWHKIHHIPSVTIS 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1714 1170 Coils Coil 41 61 - -
Ssu8g1714 1170 Gene3D - 429 509 IPR036388 -
Ssu8g1714 1170 Gene3D Ribonuclease Inhibitor 965 1150 IPR032675 -
Ssu8g1714 1170 Coils Coil 72 92 - -
Ssu8g1714 1170 PANTHER DISEASE RESISTANCE PROTEIN RP 17 892 IPR044974 GO:0006952
Ssu8g1714 1170 Pfam Rx N-terminal domain 10 102 IPR041118 -
Ssu8g1714 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 437 IPR027417 -
Ssu8g1714 1170 Pfam NB-ARC domain 182 423 IPR002182 GO:0043531
Ssu8g1714 1170 SUPERFAMILY L domain-like 965 1162 - -
Ssu8g1714 1170 Gene3D - 337 427 IPR042197 -
Ssu8g1714 1170 PANTHER OS05G0414200 PROTEIN 17 892 - -
Ssu8g1714 1170 Gene3D - 161 333 IPR027417 -
Ssu8g1714 1170 SUPERFAMILY L domain-like 498 912 - -
Ssu8g1714 1170 Gene3D Ribonuclease Inhibitor 568 958 IPR032675 -
Ssu8g1714 1170 Gene3D - 15 129 - -
Ssu8g1714 1170 PRINTS Disease resistance protein signature 277 291 - -
Ssu8g1714 1170 PRINTS Disease resistance protein signature 204 219 - -
Ssu8g1714 1170 PRINTS Disease resistance protein signature 604 620 - -
Ssu8g1714 1170 PRINTS Disease resistance protein signature 374 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1714 Ssu-Chr8 42154212 42157724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1714 205 510 WRKY Transcription Factor Family AT5G45050 25.000 4.18e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1714 - - gmx:100777510 2003.79