Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1705 ATGGTGCTCCACATCGACCCCACGAACGTGCTCTTCGACGCCGATTGGGGCTCCATCGACCTCTCCATCAACACCGACCCGAACTTCGACGAAGTGGTCACGTTAACAATTCTGTACAAGATCCCTATCGTGAAGGACCACGACATGAAGGAAAAGCTCTGTTTGGAGGTGGAACTCGGGCTCAGAGCAGTTATCATGGGAAGCCGTGGGGACTCAAGAGTAGGATTAGTTGAAGCCAACTCATACTTCAACCCGGTCTCTAAAGGCTATCCAAGAAAGGCTATCCACCGATTTGTGAATGCTGGCAGTGACATTGGGGGTGAACTGGCAAATGAAAAGCAAGTAGCAACTATATTTGGGCAAATATGGAAACTAGAATCTCTACCTtctaagaagaaagaaatgtgGCAAAGAGAGATGGAATGGGTTGTTAGTGTTAGTGATTACATTGTCGAGTTAATGCCTTCTTGGCAAACATTTCCTGATGGGAGCCAAGGAATTGTAGCCCCAGATGCAGATGGTTTGGCCTCTTTTCGCAAAACAATTGAGCGGGAAGAAGAGAAATGGTGGCTTCCCGTACCTTGTGTTCCTCCTGCAGGACTCGGTGAAGACTCAAGAAAGCAGTTGAATCACTCTCGAGAATGTGCTAACCAAATACTAAAAGCAGCCATGGCTATCAACAGCATTGCTTTGGCTGGAATGGTAGTTCCTGAGTCATATTTGGAGGTTCTTCCTAAGGCTGAATTTTTTGACAAGTTTCTCCACGGTTCAACCCTAGAGGAATGCTATTCAGCTGTTGCTTCAGTGGCAATCCACTGGCTTAATCTTCGTGATGTATGCTAA 843 0.4567 MVLHIDPTNVLFDADWGSIDLSINTDPNFDEVVTLTILYKIPIVKDHDMKEKLCLEVELGLRAVIMGSRGDSRVGLVEANSYFNPVSKGYPRKAIHRFVNAGSDIGGELANEKQVATIFGQIWKLESLPSKKKEMWQREMEWVVSVSDYIVELMPSWQTFPDGSQGIVAPDADGLASFRKTIEREEEKWWLPVPCVPPAGLGEDSRKQLNHSRECANQILKAAMAINSIALAGMVVPESYLEVLPKAEFFDKFLHGSTLEECYSAVASVAIHWLNLRDVC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1705 280 ProSiteProfiles PRONE domain profile. 1 280 IPR005512 GO:0005085
Ssu8g1705 280 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 115 164 - -
Ssu8g1705 280 Gene3D PRONE domain, subdomain 1 93 169 - -
Ssu8g1705 280 Gene3D PRONE domain, subdomain 1 170 251 - -
Ssu8g1705 280 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 115 165 IPR005512 GO:0005085
Ssu8g1705 280 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 178 247 IPR005512 GO:0005085
Ssu8g1705 280 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 165 246 - -
Ssu8g1705 280 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 165 246 IPR038937 GO:0005085
Ssu8g1705 280 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 115 164 IPR038937 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1705 Ssu-Chr8 41687547 41691647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1705 246 278 Core DNA Replication Machinery Family AT1G08260 78.788 6.68e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1705 - - gmx:100796692 226.483